miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 49440 0.66 0.733803
Target:  5'- uGGCGCUUGuggcucgcucagGUCGGCgUCUuCGCCGGc -3'
miRNA:   3'- cUCGCGGAC------------UAGCUGgAGAcGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 49474 0.67 0.714226
Target:  5'- cGAGCGCCUGcgCG-CCagcacggCcGCGCCa- -3'
miRNA:   3'- -CUCGCGGACuaGCuGGa------GaCGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 50036 0.66 0.766252
Target:  5'- -cGCGCCgUGAUgaucaaccuggccggCGGCCUgCUGgCGCUGAu -3'
miRNA:   3'- cuCGCGG-ACUA---------------GCUGGA-GAC-GCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 50121 0.66 0.762498
Target:  5'- aGAGCGCC-GGcUGGCCUCggugaugGCGgCGGa -3'
miRNA:   3'- -CUCGCGGaCUaGCUGGAGa------CGCgGCU- -5'
6371 3' -59.1 NC_001847.1 + 52257 0.66 0.724054
Target:  5'- -cGCGCCgcuUCGugCUCgcgugcccgcGCGCCGGc -3'
miRNA:   3'- cuCGCGGacuAGCugGAGa---------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 54409 0.72 0.404665
Target:  5'- cGGGCGCCgccgcGGUUGGCCUCgGCGgcCCGGg -3'
miRNA:   3'- -CUCGCGGa----CUAGCUGGAGaCGC--GGCU- -5'
6371 3' -59.1 NC_001847.1 + 58365 0.69 0.57329
Target:  5'- aGGCGCggGAcgUCGGCCUCguagcggGUGCCGGc -3'
miRNA:   3'- cUCGCGgaCU--AGCUGGAGa------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 58806 0.67 0.674319
Target:  5'- cAGCGCCUGcgcCGGCgC-CUGgGCCGGu -3'
miRNA:   3'- cUCGCGGACua-GCUG-GaGACgCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 59223 0.68 0.633867
Target:  5'- -uGCGCUUGcacgcGUCGGCCgUCggcgaugGCGCCGGc -3'
miRNA:   3'- cuCGCGGAC-----UAGCUGG-AGa------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 59872 0.68 0.654128
Target:  5'- cGAGgGCCggcGcgCGGCCUCcGCGuuGGc -3'
miRNA:   3'- -CUCgCGGa--CuaGCUGGAGaCGCggCU- -5'
6371 3' -59.1 NC_001847.1 + 60027 0.67 0.70433
Target:  5'- aGAGCGUgccGUCGGCCUCUuCGUCGGg -3'
miRNA:   3'- -CUCGCGgacUAGCUGGAGAcGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 62437 0.67 0.694375
Target:  5'- uGAGCGUgUuuucGUCGGCgcggCUCUGCGCCGc -3'
miRNA:   3'- -CUCGCGgAc---UAGCUG----GAGACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 66349 0.71 0.430687
Target:  5'- cGGGCGCCgccguggcGAUCGuCCcCgugGCGCCGAa -3'
miRNA:   3'- -CUCGCGGa-------CUAGCuGGaGa--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 68909 0.67 0.691378
Target:  5'- cGAGCGCCgccgcgcUGAgguucggcgcggCGGCCgcgggCUGCGCCu- -3'
miRNA:   3'- -CUCGCGG-------ACUa-----------GCUGGa----GACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 70375 0.69 0.553353
Target:  5'- gGGGCGCCgggGcgCGAgCUC-GCGCUGGc -3'
miRNA:   3'- -CUCGCGGa--CuaGCUgGAGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 74143 0.74 0.325458
Target:  5'- cGGCGCCgauggCGGCCUCgacgGCGCCGu -3'
miRNA:   3'- cUCGCGGacua-GCUGGAGa---CGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 74353 0.68 0.644002
Target:  5'- cGGGCGCCaccaaGGUgGGCUgCUGCGCCu- -3'
miRNA:   3'- -CUCGCGGa----CUAgCUGGaGACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 75538 0.66 0.762498
Target:  5'- cGGCGCaCcGcgCGAUCUCgGCGgCCGAg -3'
miRNA:   3'- cUCGCG-GaCuaGCUGGAGaCGC-GGCU- -5'
6371 3' -59.1 NC_001847.1 + 76375 0.66 0.753034
Target:  5'- cGGuCGCCUcuucaCGGCCUCgggggggGCGCCGGg -3'
miRNA:   3'- cUC-GCGGAcua--GCUGGAGa------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 77821 0.66 0.753034
Target:  5'- cGGCGCgUGc-CGGCCUUuuUGCGCCa- -3'
miRNA:   3'- cUCGCGgACuaGCUGGAG--ACGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.