miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 107649 0.68 0.613602
Target:  5'- cGGCgGCCga---GGCCUCUGCcGCCGAa -3'
miRNA:   3'- cUCG-CGGacuagCUGGAGACG-CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 107331 0.69 0.583323
Target:  5'- -cGCGUCU--UCGGCCUCgGCGCCc- -3'
miRNA:   3'- cuCGCGGAcuAGCUGGAGaCGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 106790 0.66 0.751129
Target:  5'- aGGGCGCCgGGggcccgggcgcgCGGCCccgCgggGCGCCGGg -3'
miRNA:   3'- -CUCGCGGaCUa-----------GCUGGa--Ga--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 105621 0.72 0.404665
Target:  5'- -cGCGCCgcgcGggCGAgCUCUGCGgCCGAa -3'
miRNA:   3'- cuCGCGGa---CuaGCUgGAGACGC-GGCU- -5'
6371 3' -59.1 NC_001847.1 + 104942 0.67 0.714226
Target:  5'- cAGCGCCUcggGGUCGAaggCgaGCGCCGGg -3'
miRNA:   3'- cUCGCGGA---CUAGCUggaGa-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 104867 0.66 0.753034
Target:  5'- cAGCGCUUGuGUCG---UCUGCGCCGc -3'
miRNA:   3'- cUCGCGGAC-UAGCuggAGACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 103907 0.67 0.664236
Target:  5'- cGGGCGCCg---CGGCCgcgggCgGCGCCGc -3'
miRNA:   3'- -CUCGCGGacuaGCUGGa----GaCGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 103762 0.67 0.674319
Target:  5'- -cGCGCCcGGg-GACgaCUGCGCCGGc -3'
miRNA:   3'- cuCGCGGaCUagCUGgaGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 101851 0.66 0.724054
Target:  5'- -uGCGCCUGccgcgagcagGUCGcggaggagcucGCCUUUGCGCgCGGa -3'
miRNA:   3'- cuCGCGGAC----------UAGC-----------UGGAGACGCG-GCU- -5'
6371 3' -59.1 NC_001847.1 + 101519 0.73 0.371554
Target:  5'- cGGGUGUUUG-UCGACCUCUaGUGCUGAc -3'
miRNA:   3'- -CUCGCGGACuAGCUGGAGA-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 101464 0.66 0.762498
Target:  5'- cGAGCGCCUG--CG-CCUCUagccccGCGCgGGc -3'
miRNA:   3'- -CUCGCGGACuaGCuGGAGA------CGCGgCU- -5'
6371 3' -59.1 NC_001847.1 + 100889 0.66 0.753034
Target:  5'- -cGCGCC-GGUCugcGCCUC-GCGCCGc -3'
miRNA:   3'- cuCGCGGaCUAGc--UGGAGaCGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 100725 0.66 0.733803
Target:  5'- -uGCGCCgccu---CUUCUGCGCCGAg -3'
miRNA:   3'- cuCGCGGacuagcuGGAGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 100505 0.73 0.355705
Target:  5'- -cGCGCCgc-UCGGCCUCggcgcgcagGCGCCGGa -3'
miRNA:   3'- cuCGCGGacuAGCUGGAGa--------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 100326 0.75 0.270817
Target:  5'- cAGCGCCcGGUCGGCCUgCcGCGCCa- -3'
miRNA:   3'- cUCGCGGaCUAGCUGGA-GaCGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 98885 0.66 0.753034
Target:  5'- -uGCGCCUGggCGGCC-CaG-GCCGGg -3'
miRNA:   3'- cuCGCGGACuaGCUGGaGaCgCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 94027 0.74 0.311067
Target:  5'- -cGCGCCUgccggGAUCGACCcuagUGCGCCGGc -3'
miRNA:   3'- cuCGCGGA-----CUAGCUGGag--ACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 92048 0.67 0.70433
Target:  5'- cGGCGCCUccGggCG-CCUCcGCcGCCGAg -3'
miRNA:   3'- cUCGCGGA--CuaGCuGGAGaCG-CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 90542 0.66 0.762498
Target:  5'- cGGCGcCCUGG-CGGcCCUCgccGCGCgCGAg -3'
miRNA:   3'- cUCGC-GGACUaGCU-GGAGa--CGCG-GCU- -5'
6371 3' -59.1 NC_001847.1 + 89843 0.68 0.654128
Target:  5'- -cGCGCCUG--CGACCgccggCUGCaagGCCGGc -3'
miRNA:   3'- cuCGCGGACuaGCUGGa----GACG---CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.