miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 88599 0.7 0.533627
Target:  5'- -cGCGgCUGGagGACCUCgcgcGCGCCGc -3'
miRNA:   3'- cuCGCgGACUagCUGGAGa---CGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 88301 0.68 0.654128
Target:  5'- -uGCGCCgcgggggcGGUCGACUUUUGCGCg-- -3'
miRNA:   3'- cuCGCGGa-------CUAGCUGGAGACGCGgcu -5'
6371 3' -59.1 NC_001847.1 + 88281 0.66 0.743467
Target:  5'- gGAGCGCU---UCG-CCUgCUGgGCCGAc -3'
miRNA:   3'- -CUCGCGGacuAGCuGGA-GACgCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 86731 0.67 0.714226
Target:  5'- cGAGCGCCgg--CGACgcgucccgCUUUGCcGCCGAg -3'
miRNA:   3'- -CUCGCGGacuaGCUG--------GAGACG-CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 84017 0.75 0.258364
Target:  5'- aGAGCGUgUGGUUGGCCUCguacaGCGCCu- -3'
miRNA:   3'- -CUCGCGgACUAGCUGGAGa----CGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 83580 0.66 0.733803
Target:  5'- cGGCGCCgcgGAagCG-CUggcgagCUGCGCCGAc -3'
miRNA:   3'- cUCGCGGa--CUa-GCuGGa-----GACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 83323 0.67 0.664236
Target:  5'- gGGGCGCUUGGcgccuccaUCGACaugcuggUCUGCGaCCGGg -3'
miRNA:   3'- -CUCGCGGACU--------AGCUGg------AGACGC-GGCU- -5'
6371 3' -59.1 NC_001847.1 + 82756 0.73 0.332837
Target:  5'- cGGCGCCguaGA-CGGCCgUCUGCGCCa- -3'
miRNA:   3'- cUCGCGGa--CUaGCUGG-AGACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 82546 0.68 0.623731
Target:  5'- aGGCGCCgcccgcgGGcUCGGCCUCgGcCGCCGc -3'
miRNA:   3'- cUCGCGGa------CU-AGCUGGAGaC-GCGGCu -5'
6371 3' -59.1 NC_001847.1 + 82508 0.7 0.523858
Target:  5'- -cGCGUCUGGcgCGGCgCUCgcgcacGCGCCGAa -3'
miRNA:   3'- cuCGCGGACUa-GCUG-GAGa-----CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 81086 0.71 0.430687
Target:  5'- cGGCGCUggcggCGGCCUCgccgcGCGCCGAc -3'
miRNA:   3'- cUCGCGGacua-GCUGGAGa----CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 79571 0.74 0.311067
Target:  5'- gGGGCGCCgGGcucgCGGCCUCUucgggcggggGCGCCGGg -3'
miRNA:   3'- -CUCGCGGaCUa---GCUGGAGA----------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 78752 0.68 0.613602
Target:  5'- -cGCGCC-GGcCGACCUCcccgacccgaGCGCCGAg -3'
miRNA:   3'- cuCGCGGaCUaGCUGGAGa---------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 77821 0.66 0.753034
Target:  5'- cGGCGCgUGc-CGGCCUUuuUGCGCCa- -3'
miRNA:   3'- cUCGCGgACuaGCUGGAG--ACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 76375 0.66 0.753034
Target:  5'- cGGuCGCCUcuucaCGGCCUCgggggggGCGCCGGg -3'
miRNA:   3'- cUC-GCGGAcua--GCUGGAGa------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 75538 0.66 0.762498
Target:  5'- cGGCGCaCcGcgCGAUCUCgGCGgCCGAg -3'
miRNA:   3'- cUCGCG-GaCuaGCUGGAGaCGC-GGCU- -5'
6371 3' -59.1 NC_001847.1 + 74353 0.68 0.644002
Target:  5'- cGGGCGCCaccaaGGUgGGCUgCUGCGCCu- -3'
miRNA:   3'- -CUCGCGGa----CUAgCUGGaGACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 74143 0.74 0.325458
Target:  5'- cGGCGCCgauggCGGCCUCgacgGCGCCGu -3'
miRNA:   3'- cUCGCGGacua-GCUGGAGa---CGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 70375 0.69 0.553353
Target:  5'- gGGGCGCCgggGcgCGAgCUC-GCGCUGGc -3'
miRNA:   3'- -CUCGCGGa--CuaGCUgGAGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 68909 0.67 0.691378
Target:  5'- cGAGCGCCgccgcgcUGAgguucggcgcggCGGCCgcgggCUGCGCCu- -3'
miRNA:   3'- -CUCGCGG-------ACUa-----------GCUGGa----GACGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.