miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 43799 0.66 0.761556
Target:  5'- cGGGCGCgcuacuaCUGAcgcUCGACggCcGCGCCGAa -3'
miRNA:   3'- -CUCGCG-------GACU---AGCUGgaGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 43697 0.67 0.664236
Target:  5'- cGGCGCaCUGG-CGugCUUUGCGCgCGc -3'
miRNA:   3'- cUCGCG-GACUaGCugGAGACGCG-GCu -5'
6371 3' -59.1 NC_001847.1 + 42679 0.7 0.48552
Target:  5'- -cGCGCUggccAUCGACCggccCUGCGCCGu -3'
miRNA:   3'- cuCGCGGac--UAGCUGGa---GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 42082 0.69 0.563298
Target:  5'- cGGCGC---AUCGGCCUCgcgGUGCCGGc -3'
miRNA:   3'- cUCGCGgacUAGCUGGAGa--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 41994 0.69 0.583323
Target:  5'- cGAGCGCUgcGUCGGCgCggaacgaagCUGCGCCGu -3'
miRNA:   3'- -CUCGCGGacUAGCUG-Ga--------GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 39313 0.66 0.733803
Target:  5'- -cGUGCCUGGcUUGcCC-CUGCcGCCGAg -3'
miRNA:   3'- cuCGCGGACU-AGCuGGaGACG-CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 36976 0.66 0.733803
Target:  5'- cGGGCGCCggcGAgcgGGCC-C-GCGCCGAg -3'
miRNA:   3'- -CUCGCGGa--CUag-CUGGaGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 34633 0.7 0.494984
Target:  5'- cGGCGCCUGcgCGccgagGCCgagCggcGCGCCGAg -3'
miRNA:   3'- cUCGCGGACuaGC-----UGGa--Ga--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 34548 0.67 0.714226
Target:  5'- cGGGCGCUUGGggccacaGGCCgccaagCUGCacGCCGAc -3'
miRNA:   3'- -CUCGCGGACUag-----CUGGa-----GACG--CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 33179 0.67 0.684368
Target:  5'- cAGCGgCUGGcCGG-CUCUGCGcCCGAc -3'
miRNA:   3'- cUCGCgGACUaGCUgGAGACGC-GGCU- -5'
6371 3' -59.1 NC_001847.1 + 33021 0.66 0.724054
Target:  5'- gGAGUGCCgc--CGcCCUCUcCGCCGAg -3'
miRNA:   3'- -CUCGCGGacuaGCuGGAGAcGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 32912 0.68 0.633867
Target:  5'- cGAGCGCCUGGaCG-CCguccCGCCGAc -3'
miRNA:   3'- -CUCGCGGACUaGCuGGagacGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 32726 0.71 0.44857
Target:  5'- gGAGCGCCUc-UCGGCCUCcG-GCCGGc -3'
miRNA:   3'- -CUCGCGGAcuAGCUGGAGaCgCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 32560 0.66 0.761556
Target:  5'- cGGCG-CUGggCGACCUggcggacgccaagCUGCGCCu- -3'
miRNA:   3'- cUCGCgGACuaGCUGGA-------------GACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 30625 0.7 0.494984
Target:  5'- cGGCGgCUGAUCGugCUC-GaCGCCGu -3'
miRNA:   3'- cUCGCgGACUAGCugGAGaC-GCGGCu -5'
6371 3' -59.1 NC_001847.1 + 29122 0.69 0.57329
Target:  5'- cGAGCGgCUGcgCGAgCUggcggaccgCUGCGCCGu -3'
miRNA:   3'- -CUCGCgGACuaGCUgGA---------GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 27872 0.66 0.733803
Target:  5'- gGGGCGCCgagGAcgCgGACgUCgcggagUGCGCCGAg -3'
miRNA:   3'- -CUCGCGGa--CUa-G-CUGgAG------ACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 27705 0.67 0.70433
Target:  5'- cGAGCGCCggcg-GGCCgcccGCGCCGAg -3'
miRNA:   3'- -CUCGCGGacuagCUGGaga-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 24590 0.67 0.70433
Target:  5'- -uGCGCCccguuaaucGAUCGACC-CU-CGCCGAu -3'
miRNA:   3'- cuCGCGGa--------CUAGCUGGaGAcGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 23864 0.68 0.633867
Target:  5'- cGAGCGCCgccccCGGCC-CgGCGCCGc -3'
miRNA:   3'- -CUCGCGGacua-GCUGGaGaCGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.