miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 88599 0.7 0.533627
Target:  5'- -cGCGgCUGGagGACCUCgcgcGCGCCGc -3'
miRNA:   3'- cuCGCgGACUagCUGGAGa---CGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 131935 0.69 0.57329
Target:  5'- cGAGCGgCUGcgCGAgCUggcggaccgCUGCGCCGu -3'
miRNA:   3'- -CUCGCgGACuaGCUgGA---------GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 78752 0.68 0.613602
Target:  5'- -cGCGCC-GGcCGACCUCcccgacccgaGCGCCGAg -3'
miRNA:   3'- cuCGCGGaCUaGCUGGAGa---------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 54409 0.72 0.404665
Target:  5'- cGGGCGCCgccgcGGUUGGCCUCgGCGgcCCGGg -3'
miRNA:   3'- -CUCGCGGa----CUAGCUGGAGaCGC--GGCU- -5'
6371 3' -59.1 NC_001847.1 + 75538 0.66 0.762498
Target:  5'- cGGCGCaCcGcgCGAUCUCgGCGgCCGAg -3'
miRNA:   3'- cUCGCG-GaCuaGCUGGAGaCGC-GGCU- -5'
6371 3' -59.1 NC_001847.1 + 77821 0.66 0.753034
Target:  5'- cGGCGCgUGc-CGGCCUUuuUGCGCCa- -3'
miRNA:   3'- cUCGCGgACuaGCUGGAG--ACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 36976 0.66 0.733803
Target:  5'- cGGGCGCCggcGAgcgGGCC-C-GCGCCGAg -3'
miRNA:   3'- -CUCGCGGa--CUag-CUGGaGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 100725 0.66 0.733803
Target:  5'- -uGCGCCgccu---CUUCUGCGCCGAg -3'
miRNA:   3'- cuCGCGGacuagcuGGAGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 33021 0.66 0.724054
Target:  5'- gGAGUGCCgc--CGcCCUCUcCGCCGAg -3'
miRNA:   3'- -CUCGCGGacuaGCuGGAGAcGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 127403 0.67 0.70433
Target:  5'- -uGCGCCccguuaaucGAUCGACC-CU-CGCCGAu -3'
miRNA:   3'- cuCGCGGa--------CUAGCUGGaGAcGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 20092 0.67 0.684368
Target:  5'- cGAGCGCCaGcUgGAgCUCUGCcCCGGa -3'
miRNA:   3'- -CUCGCGGaCuAgCUgGAGACGcGGCU- -5'
6371 3' -59.1 NC_001847.1 + 119864 0.67 0.714226
Target:  5'- cAGCGUCggGAUCGGCauugcggCUGCGgCGAu -3'
miRNA:   3'- cUCGCGGa-CUAGCUGga-----GACGCgGCU- -5'
6371 3' -59.1 NC_001847.1 + 83323 0.67 0.664236
Target:  5'- gGGGCGCUUGGcgccuccaUCGACaugcuggUCUGCGaCCGGg -3'
miRNA:   3'- -CUCGCGGACU--------AGCUGg------AGACGC-GGCU- -5'
6371 3' -59.1 NC_001847.1 + 88301 0.68 0.654128
Target:  5'- -uGCGCCgcgggggcGGUCGACUUUUGCGCg-- -3'
miRNA:   3'- cuCGCGGa-------CUAGCUGGAGACGCGgcu -5'
6371 3' -59.1 NC_001847.1 + 66349 0.71 0.430687
Target:  5'- cGGGCGCCgccguggcGAUCGuCCcCgugGCGCCGAa -3'
miRNA:   3'- -CUCGCGGa-------CUAGCuGGaGa--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 111425 1.08 0.001464
Target:  5'- aGAGCGCCUGAUCGACCUCUGCGCCGAc -3'
miRNA:   3'- -CUCGCGGACUAGCUGGAGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 118212 0.77 0.213188
Target:  5'- -cGCGCaCUGAgcagacCGGCgUCUGCGCCGAg -3'
miRNA:   3'- cuCGCG-GACUa-----GCUGgAGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 101851 0.66 0.724054
Target:  5'- -uGCGCCUGccgcgagcagGUCGcggaggagcucGCCUUUGCGCgCGGa -3'
miRNA:   3'- cuCGCGGAC----------UAGC-----------UGGAGACGCG-GCU- -5'
6371 3' -59.1 NC_001847.1 + 82546 0.68 0.623731
Target:  5'- aGGCGCCgcccgcgGGcUCGGCCUCgGcCGCCGc -3'
miRNA:   3'- cUCGCGGa------CU-AGCUGGAGaC-GCGGCu -5'
6371 3' -59.1 NC_001847.1 + 23864 0.68 0.633867
Target:  5'- cGAGCGCCgccccCGGCC-CgGCGCCGc -3'
miRNA:   3'- -CUCGCGGacua-GCUGGaGaCGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.