miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 58365 0.69 0.57329
Target:  5'- aGGCGCggGAcgUCGGCCUCguagcggGUGCCGGc -3'
miRNA:   3'- cUCGCGgaCU--AGCUGGAGa------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 44083 0.72 0.396213
Target:  5'- -cGUGCCUGcugCGGCgUCUGCGCCc- -3'
miRNA:   3'- cuCGCGGACua-GCUGgAGACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 100505 0.73 0.355705
Target:  5'- -cGCGCCgc-UCGGCCUCggcgcgcagGCGCCGGa -3'
miRNA:   3'- cuCGCGGacuAGCUGGAGa--------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 82756 0.73 0.332837
Target:  5'- cGGCGCCguaGA-CGGCCgUCUGCGCCa- -3'
miRNA:   3'- cUCGCGGa--CUaGCUGG-AGACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 74143 0.74 0.325458
Target:  5'- cGGCGCCgauggCGGCCUCgacgGCGCCGu -3'
miRNA:   3'- cUCGCGGacua-GCUGGAGa---CGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 94027 0.74 0.311067
Target:  5'- -cGCGCCUgccggGAUCGACCcuagUGCGCCGGc -3'
miRNA:   3'- cuCGCGGA-----CUAGCUGGag--ACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 79571 0.74 0.311067
Target:  5'- gGGGCGCCgGGcucgCGGCCUCUucgggcggggGCGCCGGg -3'
miRNA:   3'- -CUCGCGGaCUa---GCUGGAGA----------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 100326 0.75 0.270817
Target:  5'- cAGCGCCcGGUCGGCCUgCcGCGCCa- -3'
miRNA:   3'- cUCGCGGaCUAGCUGGA-GaCGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 84017 0.75 0.258364
Target:  5'- aGAGCGUgUGGUUGGCCUCguacaGCGCCu- -3'
miRNA:   3'- -CUCGCGgACUAGCUGGAGa----CGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 105621 0.72 0.404665
Target:  5'- -cGCGCCgcgcGggCGAgCUCUGCGgCCGAa -3'
miRNA:   3'- cuCGCGGa---CuaGCUgGAGACGC-GGCU- -5'
6371 3' -59.1 NC_001847.1 + 81086 0.71 0.430687
Target:  5'- cGGCGCUggcggCGGCCUCgccgcGCGCCGAc -3'
miRNA:   3'- cUCGCGGacua-GCUGGAGa----CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 11677 0.7 0.48552
Target:  5'- gGGGCGCUgcAUCGGCCUCaucaGCGCCu- -3'
miRNA:   3'- -CUCGCGGacUAGCUGGAGa---CGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 45215 0.69 0.57329
Target:  5'- cGAGCGCCgccgcGAgcgCGGCCUC-GCGCgGc -3'
miRNA:   3'- -CUCGCGGa----CUa--GCUGGAGaCGCGgCu -5'
6371 3' -59.1 NC_001847.1 + 29122 0.69 0.57329
Target:  5'- cGAGCGgCUGcgCGAgCUggcggaccgCUGCGCCGu -3'
miRNA:   3'- -CUCGCgGACuaGCUgGA---------GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 42082 0.69 0.563298
Target:  5'- cGGCGC---AUCGGCCUCgcgGUGCCGGc -3'
miRNA:   3'- cUCGCGgacUAGCUGGAGa--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 127310 0.69 0.543461
Target:  5'- cGGUGCCgGAgacacggCGACCg--GCGCCGAg -3'
miRNA:   3'- cUCGCGGaCUa------GCUGGagaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 122106 0.7 0.533627
Target:  5'- cAGCGCCucagUGggCGGCaugCUGCGCCGu -3'
miRNA:   3'- cUCGCGG----ACuaGCUGga-GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 82508 0.7 0.523858
Target:  5'- -cGCGUCUGGcgCGGCgCUCgcgcacGCGCCGAa -3'
miRNA:   3'- cuCGCGGACUa-GCUG-GAGa-----CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 133184 0.7 0.504532
Target:  5'- cGGGCGCgggcugcccucgCUGGagGAgCUCUGCGCCGc -3'
miRNA:   3'- -CUCGCG------------GACUagCUgGAGACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 30625 0.7 0.494984
Target:  5'- cGGCGgCUGAUCGugCUC-GaCGCCGu -3'
miRNA:   3'- cUCGCgGACUAGCugGAGaC-GCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.