Results 101 - 113 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 122106 | 0.7 | 0.533627 |
Target: 5'- cAGCGCCucagUGggCGGCaugCUGCGCCGu -3' miRNA: 3'- cUCGCGG----ACuaGCUGga-GACGCGGCu -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 82546 | 0.68 | 0.623731 |
Target: 5'- aGGCGCCgcccgcgGGcUCGGCCUCgGcCGCCGc -3' miRNA: 3'- cUCGCGGa------CU-AGCUGGAGaC-GCGGCu -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 13150 | 0.68 | 0.623731 |
Target: 5'- -cGCGUUg---CGACCcagCUGCGCCGAg -3' miRNA: 3'- cuCGCGGacuaGCUGGa--GACGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 107649 | 0.68 | 0.613602 |
Target: 5'- cGGCgGCCga---GGCCUCUGCcGCCGAa -3' miRNA: 3'- cUCG-CGGacuagCUGGAGACG-CGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 11584 | 0.69 | 0.583323 |
Target: 5'- cGGUGCC-GGUUG-CUUCUGCGCUGGc -3' miRNA: 3'- cUCGCGGaCUAGCuGGAGACGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 4518 | 0.69 | 0.583323 |
Target: 5'- -cGCGUCU--UCGGCCUCgGCGCCc- -3' miRNA: 3'- cuCGCGGAcuAGCUGGAGaCGCGGcu -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 58365 | 0.69 | 0.57329 |
Target: 5'- aGGCGCggGAcgUCGGCCUCguagcggGUGCCGGc -3' miRNA: 3'- cUCGCGgaCU--AGCUGGAGa------CGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 45215 | 0.69 | 0.57329 |
Target: 5'- cGAGCGCCgccgcGAgcgCGGCCUC-GCGCgGc -3' miRNA: 3'- -CUCGCGGa----CUa--GCUGGAGaCGCGgCu -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 29122 | 0.69 | 0.57329 |
Target: 5'- cGAGCGgCUGcgCGAgCUggcggaccgCUGCGCCGu -3' miRNA: 3'- -CUCGCgGACuaGCUgGA---------GACGCGGCu -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 8449 | 0.69 | 0.563298 |
Target: 5'- cGGCGCCgGGUCGGaggCgGCGCCGGg -3' miRNA: 3'- cUCGCGGaCUAGCUggaGaCGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 42082 | 0.69 | 0.563298 |
Target: 5'- cGGCGC---AUCGGCCUCgcgGUGCCGGc -3' miRNA: 3'- cUCGCGgacUAGCUGGAGa--CGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 127310 | 0.69 | 0.543461 |
Target: 5'- cGGUGCCgGAgacacggCGACCg--GCGCCGAg -3' miRNA: 3'- cUCGCGGaCUa------GCUGGagaCGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 118212 | 0.77 | 0.213188 |
Target: 5'- -cGCGCaCUGAgcagacCGGCgUCUGCGCCGAg -3' miRNA: 3'- cuCGCG-GACUa-----GCUGgAGACGCGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home