Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 114976 | 0.66 | 0.762498 |
Target: 5'- -cGCGCCc-GUUG-CCUgaGCGCCGAg -3' miRNA: 3'- cuCGCGGacUAGCuGGAgaCGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 50036 | 0.66 | 0.766252 |
Target: 5'- -cGCGCCgUGAUgaucaaccuggccggCGGCCUgCUGgCGCUGAu -3' miRNA: 3'- cuCGCGG-ACUA---------------GCUGGA-GAC-GCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 47424 | 0.65 | 0.769055 |
Target: 5'- cGGCGUCUGcgacgucGUCGGCUUCgccgccgccgcgGCGCCGc -3' miRNA: 3'- cUCGCGGAC-------UAGCUGGAGa-----------CGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 27872 | 0.66 | 0.733803 |
Target: 5'- gGGGCGCCgagGAcgCgGACgUCgcggagUGCGCCGAg -3' miRNA: 3'- -CUCGCGGa--CUa-G-CUGgAG------ACGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 101851 | 0.66 | 0.724054 |
Target: 5'- -uGCGCCUGccgcgagcagGUCGcggaggagcucGCCUUUGCGCgCGGa -3' miRNA: 3'- cuCGCGGAC----------UAGC-----------UGGAGACGCG-GCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 89843 | 0.68 | 0.654128 |
Target: 5'- -cGCGCCUG--CGACCgccggCUGCaagGCCGGc -3' miRNA: 3'- cuCGCGGACuaGCUGGa----GACG---CGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 1094 | 0.67 | 0.664236 |
Target: 5'- cGGGCGCCg---CGGCCgcgggCgGCGCCGc -3' miRNA: 3'- -CUCGCGGacuaGCUGGa----GaCGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 949 | 0.67 | 0.674319 |
Target: 5'- -cGCGCCcGGg-GACgaCUGCGCCGGc -3' miRNA: 3'- cuCGCGGaCUagCUGgaGACGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 68909 | 0.67 | 0.691378 |
Target: 5'- cGAGCGCCgccgcgcUGAgguucggcgcggCGGCCgcgggCUGCGCCu- -3' miRNA: 3'- -CUCGCGG-------ACUa-----------GCUGGa----GACGCGGcu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 62437 | 0.67 | 0.694375 |
Target: 5'- uGAGCGUgUuuucGUCGGCgcggCUCUGCGCCGc -3' miRNA: 3'- -CUCGCGgAc---UAGCUG----GAGACGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 19010 | 0.67 | 0.70433 |
Target: 5'- cGGCGCCc--UCGGCCUCUucGCGCgUGAc -3' miRNA: 3'- cUCGCGGacuAGCUGGAGA--CGCG-GCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 24590 | 0.67 | 0.70433 |
Target: 5'- -uGCGCCccguuaaucGAUCGACC-CU-CGCCGAu -3' miRNA: 3'- cuCGCGGa--------CUAGCUGGaGAcGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 27705 | 0.67 | 0.70433 |
Target: 5'- cGAGCGCCggcg-GGCCgcccGCGCCGAg -3' miRNA: 3'- -CUCGCGGacuagCUGGaga-CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 45363 | 0.67 | 0.70433 |
Target: 5'- cAGCGCgaUGA-CGGCCUCguaCGCCGGc -3' miRNA: 3'- cUCGCGg-ACUaGCUGGAGac-GCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 92048 | 0.67 | 0.70433 |
Target: 5'- cGGCGCCUccGggCG-CCUCcGCcGCCGAg -3' miRNA: 3'- cUCGCGGA--CuaGCuGGAGaCG-CGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 111359 | 0.67 | 0.70433 |
Target: 5'- -cGCG-CUGggCGACCUC-GCGCCc- -3' miRNA: 3'- cuCGCgGACuaGCUGGAGaCGCGGcu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 2129 | 0.67 | 0.714226 |
Target: 5'- cAGCGCCUcggGGUCGAaggCgaGCGCCGGg -3' miRNA: 3'- cUCGCGGA---CUAGCUggaGa-CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 86731 | 0.67 | 0.714226 |
Target: 5'- cGAGCGCCgg--CGACgcgucccgCUUUGCcGCCGAg -3' miRNA: 3'- -CUCGCGGacuaGCUG--------GAGACG-CGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 113510 | 0.66 | 0.762498 |
Target: 5'- -cGCGCCcggGcgCGGCC-C-GCGCCGGc -3' miRNA: 3'- cuCGCGGa--CuaGCUGGaGaCGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 117578 | 0.75 | 0.283749 |
Target: 5'- gGGGCGCgCUGccCGGCCaaaacgUCUGCGCCGGg -3' miRNA: 3'- -CUCGCG-GACuaGCUGG------AGACGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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