Results 81 - 100 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 32912 | 0.68 | 0.633867 |
Target: 5'- cGAGCGCCUGGaCG-CCguccCGCCGAc -3' miRNA: 3'- -CUCGCGGACUaGCuGGagacGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 34633 | 0.7 | 0.494984 |
Target: 5'- cGGCGCCUGcgCGccgagGCCgagCggcGCGCCGAg -3' miRNA: 3'- cUCGCGGACuaGC-----UGGa--Ga--CGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 42679 | 0.7 | 0.48552 |
Target: 5'- -cGCGCUggccAUCGACCggccCUGCGCCGu -3' miRNA: 3'- cuCGCGGac--UAGCUGGa---GACGCGGCu -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 32726 | 0.71 | 0.44857 |
Target: 5'- gGAGCGCCUc-UCGGCCUCcG-GCCGGc -3' miRNA: 3'- -CUCGCGGAcuAGCUGGAGaCgCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 66349 | 0.71 | 0.430687 |
Target: 5'- cGGGCGCCgccguggcGAUCGuCCcCgugGCGCCGAa -3' miRNA: 3'- -CUCGCGGa-------CUAGCuGGaGa--CGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 54409 | 0.72 | 0.404665 |
Target: 5'- cGGGCGCCgccgcGGUUGGCCUCgGCGgcCCGGg -3' miRNA: 3'- -CUCGCGGa----CUAGCUGGAGaCGC--GGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 2577 | 0.72 | 0.404665 |
Target: 5'- cGGGCGCCUGcgCGGCCgCcGCgGCCGc -3' miRNA: 3'- -CUCGCGGACuaGCUGGaGaCG-CGGCu -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 101519 | 0.73 | 0.371554 |
Target: 5'- cGGGUGUUUG-UCGACCUCUaGUGCUGAc -3' miRNA: 3'- -CUCGCGGACuAGCUGGAGA-CGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 117578 | 0.75 | 0.283749 |
Target: 5'- gGGGCGCgCUGccCGGCCaaaacgUCUGCGCCGGg -3' miRNA: 3'- -CUCGCG-GACuaGCUGG------AGACGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 133438 | 0.7 | 0.494984 |
Target: 5'- cGGCGgCUGAUCGugCUC-GaCGCCGu -3' miRNA: 3'- cUCGCgGACUAGCugGAGaC-GCGGCu -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 88599 | 0.7 | 0.533627 |
Target: 5'- -cGCGgCUGGagGACCUCgcgcGCGCCGc -3' miRNA: 3'- cuCGCgGACUagCUGGAGa---CGCGGCu -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 70375 | 0.69 | 0.553353 |
Target: 5'- gGGGCGCCgggGcgCGAgCUC-GCGCUGGc -3' miRNA: 3'- -CUCGCGGa--CuaGCUgGAGaCGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 126677 | 0.68 | 0.633867 |
Target: 5'- cGAGCGCCgccccCGGCC-CgGCGCCGc -3' miRNA: 3'- -CUCGCGGacua-GCUGGaGaCGCGGCu -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 59223 | 0.68 | 0.633867 |
Target: 5'- -uGCGCUUGcacgcGUCGGCCgUCggcgaugGCGCCGGc -3' miRNA: 3'- cuCGCGGAC-----UAGCUGG-AGa------CGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 78752 | 0.68 | 0.613602 |
Target: 5'- -cGCGCC-GGcCGACCUCcccgacccgaGCGCCGAg -3' miRNA: 3'- cuCGCGGaCUaGCUGGAGa---------CGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 107331 | 0.69 | 0.583323 |
Target: 5'- -cGCGUCU--UCGGCCUCgGCGCCc- -3' miRNA: 3'- cuCGCGGAcuAGCUGGAGaCGCGGcu -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 41994 | 0.69 | 0.583323 |
Target: 5'- cGAGCGCUgcGUCGGCgCggaacgaagCUGCGCCGu -3' miRNA: 3'- -CUCGCGGacUAGCUG-Ga--------GACGCGGCu -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 131935 | 0.69 | 0.57329 |
Target: 5'- cGAGCGgCUGcgCGAgCUggcggaccgCUGCGCCGu -3' miRNA: 3'- -CUCGCgGACuaGCUgGA---------GACGCGGCu -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 121809 | 0.69 | 0.563298 |
Target: 5'- cGGGCGCCUGcUCG-CCgcccGUGCCGGa -3' miRNA: 3'- -CUCGCGGACuAGCuGGaga-CGCGGCU- -5' |
|||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 111262 | 0.69 | 0.563298 |
Target: 5'- cGGCGCCgGGUCGGaggCgGCGCCGGg -3' miRNA: 3'- cUCGCGGaCUAGCUggaGaCGCGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home