Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 3978 | 0.66 | 0.743467 |
Target: 5'- aGGGCGCCgGGggccgggcgcgCGGCCccgCgggGCGCCGGg -3' miRNA: 3'- -CUCGCGGaCUa----------GCUGGa--Ga--CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 39313 | 0.66 | 0.733803 |
Target: 5'- -cGUGCCUGGcUUGcCC-CUGCcGCCGAg -3' miRNA: 3'- cuCGCGGACU-AGCuGGaGACG-CGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 36976 | 0.66 | 0.733803 |
Target: 5'- cGGGCGCCggcGAgcgGGCC-C-GCGCCGAg -3' miRNA: 3'- -CUCGCGGa--CUag-CUGGaGaCGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 100725 | 0.66 | 0.733803 |
Target: 5'- -uGCGCCgccu---CUUCUGCGCCGAg -3' miRNA: 3'- cuCGCGGacuagcuGGAGACGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 130685 | 0.66 | 0.733803 |
Target: 5'- gGGGCGCCgagGAcgCgGACgUCgcggagUGCGCCGAg -3' miRNA: 3'- -CUCGCGGa--CUa-G-CUGgAG------ACGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 49440 | 0.66 | 0.733803 |
Target: 5'- uGGCGCUUGuggcucgcucagGUCGGCgUCUuCGCCGGc -3' miRNA: 3'- cUCGCGGAC------------UAGCUGgAGAcGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 83580 | 0.66 | 0.733803 |
Target: 5'- cGGCGCCgcgGAagCG-CUggcgagCUGCGCCGAc -3' miRNA: 3'- cUCGCGGa--CUa-GCuGGa-----GACGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 27872 | 0.66 | 0.733803 |
Target: 5'- gGGGCGCCgagGAcgCgGACgUCgcggagUGCGCCGAg -3' miRNA: 3'- -CUCGCGGa--CUa-G-CUGgAG------ACGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 52257 | 0.66 | 0.724054 |
Target: 5'- -cGCGCCgcuUCGugCUCgcgugcccgcGCGCCGGc -3' miRNA: 3'- cuCGCGGacuAGCugGAGa---------CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 45238 | 0.66 | 0.724054 |
Target: 5'- cAGCGUUUGA-CGA-CUUUGCGCCGc -3' miRNA: 3'- cUCGCGGACUaGCUgGAGACGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 101851 | 0.66 | 0.724054 |
Target: 5'- -uGCGCCUGccgcgagcagGUCGcggaggagcucGCCUUUGCGCgCGGa -3' miRNA: 3'- cuCGCGGAC----------UAGC-----------UGGAGACGCG-GCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 33021 | 0.66 | 0.724054 |
Target: 5'- gGAGUGCCgc--CGcCCUCUcCGCCGAg -3' miRNA: 3'- -CUCGCGGacuaGCuGGAGAcGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 104942 | 0.67 | 0.714226 |
Target: 5'- cAGCGCCUcggGGUCGAaggCgaGCGCCGGg -3' miRNA: 3'- cUCGCGGA---CUAGCUggaGa-CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 119864 | 0.67 | 0.714226 |
Target: 5'- cAGCGUCggGAUCGGCauugcggCUGCGgCGAu -3' miRNA: 3'- cUCGCGGa-CUAGCUGga-----GACGCgGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 34548 | 0.67 | 0.714226 |
Target: 5'- cGGGCGCUUGGggccacaGGCCgccaagCUGCacGCCGAc -3' miRNA: 3'- -CUCGCGGACUag-----CUGGa-----GACG--CGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 2129 | 0.67 | 0.714226 |
Target: 5'- cAGCGCCUcggGGUCGAaggCgaGCGCCGGg -3' miRNA: 3'- cUCGCGGA---CUAGCUggaGa-CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 49474 | 0.67 | 0.714226 |
Target: 5'- cGAGCGCCUGcgCG-CCagcacggCcGCGCCa- -3' miRNA: 3'- -CUCGCGGACuaGCuGGa------GaCGCGGcu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 86731 | 0.67 | 0.714226 |
Target: 5'- cGAGCGCCgg--CGACgcgucccgCUUUGCcGCCGAg -3' miRNA: 3'- -CUCGCGGacuaGCUG--------GAGACG-CGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 111359 | 0.67 | 0.70433 |
Target: 5'- -cGCG-CUGggCGACCUC-GCGCCc- -3' miRNA: 3'- cuCGCgGACuaGCUGGAGaCGCGGcu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 60027 | 0.67 | 0.70433 |
Target: 5'- aGAGCGUgccGUCGGCCUCUuCGUCGGg -3' miRNA: 3'- -CUCGCGgacUAGCUGGAGAcGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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