miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 5' -52.3 NC_001847.1 + 101162 0.66 0.974333
Target:  5'- --cCG-GGGCCGGGGCCggGGUCGGg-- -3'
miRNA:   3'- caaGCaCCUGGUCUCGG--UCAGUUaca -5'
6371 5' -52.3 NC_001847.1 + 2881 0.66 0.972659
Target:  5'- -gUCGUcGGGCCGGgugcgucgccguucgGGCCggacGGUCGGUGUc -3'
miRNA:   3'- caAGCA-CCUGGUC---------------UCGG----UCAGUUACA- -5'
6371 5' -52.3 NC_001847.1 + 111327 0.66 0.961661
Target:  5'- --gCGcUGGACCGcGAGCaguGGUCGGUGg -3'
miRNA:   3'- caaGC-ACCUGGU-CUCGg--UCAGUUACa -5'
6371 5' -52.3 NC_001847.1 + 95162 0.68 0.930186
Target:  5'- gGUUCGUcaGGGCgCAGAGCgAGaccUCGGUGg -3'
miRNA:   3'- -CAAGCA--CCUG-GUCUCGgUC---AGUUACa -5'
6371 5' -52.3 NC_001847.1 + 70417 0.68 0.930186
Target:  5'- -cUCGUGGGCUgcacGGCCGcGUCGGUGg -3'
miRNA:   3'- caAGCACCUGGuc--UCGGU-CAGUUACa -5'
6371 5' -52.3 NC_001847.1 + 96140 0.68 0.924665
Target:  5'- -aUCG-GGGCCGGAGCCGGa------ -3'
miRNA:   3'- caAGCaCCUGGUCUCGGUCaguuaca -5'
6371 5' -52.3 NC_001847.1 + 45743 0.69 0.906545
Target:  5'- -----cGGGCCAGAGCCcGUCcGUGa -3'
miRNA:   3'- caagcaCCUGGUCUCGGuCAGuUACa -5'
6371 5' -52.3 NC_001847.1 + 117199 0.69 0.899992
Target:  5'- --cCGUGGggacGCCGGAGCCGccGUCcGUGUc -3'
miRNA:   3'- caaGCACC----UGGUCUCGGU--CAGuUACA- -5'
6371 5' -52.3 NC_001847.1 + 115439 0.71 0.8124
Target:  5'- -gUCGcgGGGCCGGAGCCGGcauUCAAa-- -3'
miRNA:   3'- caAGCa-CCUGGUCUCGGUC---AGUUaca -5'
6371 5' -52.3 NC_001847.1 + 96104 0.71 0.793842
Target:  5'- -gUCG-GGGCCGGAGCCggAGUCGGg-- -3'
miRNA:   3'- caAGCaCCUGGUCUCGG--UCAGUUaca -5'
6371 5' -52.3 NC_001847.1 + 109469 0.71 0.793842
Target:  5'- -gUCGUGGAUCgcaugAGAGCgCAGUCGcgGg -3'
miRNA:   3'- caAGCACCUGG-----UCUCG-GUCAGUuaCa -5'
6371 5' -52.3 NC_001847.1 + 92448 0.76 0.544842
Target:  5'- -aUCGUGcGACacacggcgCAGGGCCGGUCGAUGg -3'
miRNA:   3'- caAGCAC-CUG--------GUCUCGGUCAGUUACa -5'
6371 5' -52.3 NC_001847.1 + 111460 1.07 0.006543
Target:  5'- cGUUCGUGGACCAGAGCCAGUCAAUGUc -3'
miRNA:   3'- -CAAGCACCUGGUCUCGGUCAGUUACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.