miRNA display CGI


Results 21 - 40 of 429 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 3' -53.9 NC_001847.1 + 87925 0.66 0.951563
Target:  5'- ----aACgCCgugGCCGAGGAGGCCcUGCg -3'
miRNA:   3'- ugucaUG-GGa--UGGCUUUUCCGGcGCG- -5'
6372 3' -53.9 NC_001847.1 + 43771 0.66 0.951563
Target:  5'- gACuGcAUCCUGCCGGugcuGGaCGCGCg -3'
miRNA:   3'- -UGuCaUGGGAUGGCUuuu-CCgGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 83945 0.66 0.951563
Target:  5'- cCAGcACCgagcGCCGAaacagGAAGGCCGuCGCc -3'
miRNA:   3'- uGUCaUGGga--UGGCU-----UUUCCGGC-GCG- -5'
6372 3' -53.9 NC_001847.1 + 101454 0.66 0.951563
Target:  5'- cGCGGaaacUGCCgCcgcgcgGCCGcAAGGGCgGCGCg -3'
miRNA:   3'- -UGUC----AUGG-Ga-----UGGCuUUUCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 50050 0.66 0.951563
Target:  5'- cGCGGUGgCg-GCCGc--GGGuCCGCGCg -3'
miRNA:   3'- -UGUCAUgGgaUGGCuuuUCC-GGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 108636 0.66 0.951563
Target:  5'- gGCGGgcgACgCUGCaGAAGuggccgGGGCCGCGg -3'
miRNA:   3'- -UGUCa--UGgGAUGgCUUU------UCCGGCGCg -5'
6372 3' -53.9 NC_001847.1 + 17305 0.66 0.951563
Target:  5'- gUAGUACUCggcgGCgCGGcacacGGCCGCGUa -3'
miRNA:   3'- uGUCAUGGGa---UG-GCUuuu--CCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 33943 0.66 0.951563
Target:  5'- uGCAG-GCCC-GCCGGagaaGAAGGacagaguuagaCCGCGCc -3'
miRNA:   3'- -UGUCaUGGGaUGGCU----UUUCC-----------GGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 60736 0.66 0.951563
Target:  5'- uCGGcgGCCCgcgcGCgCGcGgcGGCCGCGCg -3'
miRNA:   3'- uGUCa-UGGGa---UG-GCuUuuCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 101821 0.66 0.951563
Target:  5'- cGCAGcGCgCCgccaCGAAcaacAGGCUGCGCa -3'
miRNA:   3'- -UGUCaUG-GGaug-GCUUu---UCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 23777 0.66 0.951563
Target:  5'- aGCGGaUGCCCggGCgCGAGGucGCCcaGCGCg -3'
miRNA:   3'- -UGUC-AUGGGa-UG-GCUUUucCGG--CGCG- -5'
6372 3' -53.9 NC_001847.1 + 14351 0.66 0.951145
Target:  5'- -gGGUGCCugCUGCCGAcgcucgcAGAugccacGGCCGCGg -3'
miRNA:   3'- ugUCAUGG--GAUGGCU-------UUU------CCGGCGCg -5'
6372 3' -53.9 NC_001847.1 + 54530 0.66 0.951145
Target:  5'- gGCGGgGCCgU-CCGggGgcgcagacggcggGGGCgGCGCg -3'
miRNA:   3'- -UGUCaUGGgAuGGCuuU-------------UCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 38478 0.66 0.947274
Target:  5'- uGCAGgaUAgCCUcgaggacgucGCCGggG-GGCgGCGCg -3'
miRNA:   3'- -UGUC--AUgGGA----------UGGCuuUuCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 58219 0.66 0.947274
Target:  5'- gGCGGaucUGCCC-GCCGGGcggcagcGGCgGCGCg -3'
miRNA:   3'- -UGUC---AUGGGaUGGCUUuu-----CCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 31099 0.66 0.947274
Target:  5'- cGguGUACCUgGCCugc-GGGCgGCGCg -3'
miRNA:   3'- -UguCAUGGGaUGGcuuuUCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 93147 0.66 0.947274
Target:  5'- cCGGcGCCCcccGCgGGAAAGGCgGcCGCg -3'
miRNA:   3'- uGUCaUGGGa--UGgCUUUUCCGgC-GCG- -5'
6372 3' -53.9 NC_001847.1 + 48203 0.66 0.947274
Target:  5'- cCGGcgGCCaggGCCGAGGAGcGCaGCGCc -3'
miRNA:   3'- uGUCa-UGGga-UGGCUUUUC-CGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 73750 0.66 0.947274
Target:  5'- gGCAGUuCCaagcGCCGGGc-GGCgGCGCg -3'
miRNA:   3'- -UGUCAuGGga--UGGCUUuuCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 87918 0.66 0.947274
Target:  5'- gGCGGgGCgUgggGCUGGGcgcGGCCGCGCa -3'
miRNA:   3'- -UGUCaUGgGa--UGGCUUuu-CCGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.