Results 61 - 80 of 652 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6372 | 5' | -61.3 | NC_001847.1 | + | 83837 | 0.66 | 0.683859 |
Target: 5'- -aGCGCCGCCGCa-GCacGGGC--UGGa -3' miRNA: 3'- cgCGCGGUGGCGagCGa-CCCGuaGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 73884 | 0.66 | 0.664245 |
Target: 5'- cCGCGCgCGCCGCggaCGCggacGGCGUUGc -3' miRNA: 3'- cGCGCG-GUGGCGa--GCGac--CCGUAGCc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 66361 | 0.66 | 0.664245 |
Target: 5'- cGCGCgGCCGCCGCggCGaUGGaGC-UCGc -3' miRNA: 3'- -CGCG-CGGUGGCGa-GCgACC-CGuAGCc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 53295 | 0.66 | 0.664245 |
Target: 5'- cGCGCGCUcgaucGCCGCcagUGCggcGGGCGacaGGa -3' miRNA: 3'- -CGCGCGG-----UGGCGa--GCGa--CCCGUag-CC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 95523 | 0.66 | 0.664245 |
Target: 5'- gGCGCGCCAg-GCUUGCcccugGGGC-UgGGg -3' miRNA: 3'- -CGCGCGGUggCGAGCGa----CCCGuAgCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 75158 | 0.66 | 0.664245 |
Target: 5'- uGCGUGCUagGCCGC-CGCgucGGGacCAUCGu -3' miRNA: 3'- -CGCGCGG--UGGCGaGCGa--CCC--GUAGCc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 75830 | 0.66 | 0.664245 |
Target: 5'- -nGCGCCGCCgGCgccgCGCcuggcacccUGGGUA-CGGu -3' miRNA: 3'- cgCGCGGUGG-CGa---GCG---------ACCCGUaGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 58867 | 0.66 | 0.660308 |
Target: 5'- cGCGCGCCAggcaguguuagucUCGUUgGCgaggugcgccuccauGGCGUCGGg -3' miRNA: 3'- -CGCGCGGU-------------GGCGAgCGac-------------CCGUAGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 116628 | 0.66 | 0.654397 |
Target: 5'- gGCGCGCCcgcAgCGCUgGCcucGGCAgccgCGGg -3' miRNA: 3'- -CGCGCGG---UgGCGAgCGac-CCGUa---GCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 104948 | 0.66 | 0.664245 |
Target: 5'- gGCGCGCgCGCCGC--GCaccGCGUCGGc -3' miRNA: 3'- -CGCGCG-GUGGCGagCGaccCGUAGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 50341 | 0.66 | 0.673087 |
Target: 5'- cCGgGCUGCCGCUaggguaaagcuggCGCUGgccGGCGUCGc -3' miRNA: 3'- cGCgCGGUGGCGA-------------GCGAC---CCGUAGCc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 29258 | 0.66 | 0.674068 |
Target: 5'- uGCGCGCCggACgCGCUgGC-GGcGCAccCGGa -3' miRNA: 3'- -CGCGCGG--UG-GCGAgCGaCC-CGUa-GCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 13535 | 0.66 | 0.683859 |
Target: 5'- aGCG-GCagcaACCGC-CGCcgGGGCGgcgCGGu -3' miRNA: 3'- -CGCgCGg---UGGCGaGCGa-CCCGUa--GCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 127796 | 0.66 | 0.682882 |
Target: 5'- aGCGCGCugacggcuacCACCGCUucuUGCaGGcgaaauaGCGUCGGu -3' miRNA: 3'- -CGCGCG----------GUGGCGA---GCGaCC-------CGUAGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 121650 | 0.66 | 0.681904 |
Target: 5'- gGCGCGCacuucgcggaagGCCGC-CGCUGuGGgGUgCGGc -3' miRNA: 3'- -CGCGCGg-----------UGGCGaGCGAC-CCgUA-GCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 116427 | 0.66 | 0.674068 |
Target: 5'- cGCGCGCUuggGCUCGa-GGGCggUGGg -3' miRNA: 3'- -CGCGCGGuggCGAGCgaCCCGuaGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 113061 | 0.66 | 0.674068 |
Target: 5'- aGCGCGUCGgCGCaCGuCUGcGCaAUCGGa -3' miRNA: 3'- -CGCGCGGUgGCGaGC-GACcCG-UAGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 56733 | 0.66 | 0.674068 |
Target: 5'- cGCGCGCCAgcagcgcgcCCGCa-GCggcgGGGUccUCGGc -3' miRNA: 3'- -CGCGCGGU---------GGCGagCGa---CCCGu-AGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 42729 | 0.66 | 0.674068 |
Target: 5'- gGCGgGCgGCCGC--GC-GGGCggCGGg -3' miRNA: 3'- -CGCgCGgUGGCGagCGaCCCGuaGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 98802 | 0.66 | 0.654397 |
Target: 5'- gGCGCGCCGCgGCgCGC--GGCA-CGa -3' miRNA: 3'- -CGCGCGGUGgCGaGCGacCCGUaGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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