miRNA display CGI


Results 101 - 120 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 98631 0.66 0.643547
Target:  5'- aGCGUGCaCACCGC-CGCUucgucgcccagaaGGGCcgCc- -3'
miRNA:   3'- -CGCGCG-GUGGCGaGCGA-------------CCCGuaGcc -5'
6372 5' -61.3 NC_001847.1 + 69271 0.66 0.693611
Target:  5'- gGCG-GCgGCCGCggGCUuccucuacgcGGGCGUgCGGg -3'
miRNA:   3'- -CGCgCGgUGGCGagCGA----------CCCGUA-GCC- -5'
6372 5' -61.3 NC_001847.1 + 77086 0.66 0.693611
Target:  5'- cGCGCGCCAaucggcggcCCGCgCGC-GGuaGCggCGGg -3'
miRNA:   3'- -CGCGCGGU---------GGCGaGCGaCC--CGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 58658 0.66 0.683859
Target:  5'- cCGgGUCGCaCGCUUGCggcgguUGGGCGggCGGc -3'
miRNA:   3'- cGCgCGGUG-GCGAGCG------ACCCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 132037 0.66 0.653412
Target:  5'- -gGCGCUcuaccugGCCGCuaUCGUgggGGGCGUCa- -3'
miRNA:   3'- cgCGCGG-------UGGCG--AGCGa--CCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 49806 0.66 0.653412
Target:  5'- gGUGCGCUGCUGCUgggcgCGCUGGcggccuggacgcuGCAggCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGA-----GCGACC-------------CGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 9721 0.66 0.654397
Target:  5'- uGCGCgGCCACuCGCUUGCcacgcgaccGGGCGggcccugcccCGGg -3'
miRNA:   3'- -CGCG-CGGUG-GCGAGCGa--------CCCGUa---------GCC- -5'
6372 5' -61.3 NC_001847.1 + 66361 0.66 0.664245
Target:  5'- cGCGCgGCCGCCGCggCGaUGGaGC-UCGc -3'
miRNA:   3'- -CGCG-CGGUGGCGa-GCgACC-CGuAGCc -5'
6372 5' -61.3 NC_001847.1 + 53295 0.66 0.664245
Target:  5'- cGCGCGCUcgaucGCCGCcagUGCggcGGGCGacaGGa -3'
miRNA:   3'- -CGCGCGG-----UGGCGa--GCGa--CCCGUag-CC- -5'
6372 5' -61.3 NC_001847.1 + 95523 0.66 0.664245
Target:  5'- gGCGCGCCAg-GCUUGCcccugGGGC-UgGGg -3'
miRNA:   3'- -CGCGCGGUggCGAGCGa----CCCGuAgCC- -5'
6372 5' -61.3 NC_001847.1 + 75158 0.66 0.664245
Target:  5'- uGCGUGCUagGCCGC-CGCgucGGGacCAUCGu -3'
miRNA:   3'- -CGCGCGG--UGGCGaGCGa--CCC--GUAGCc -5'
6372 5' -61.3 NC_001847.1 + 75830 0.66 0.664245
Target:  5'- -nGCGCCGCCgGCgccgCGCcuggcacccUGGGUA-CGGu -3'
miRNA:   3'- cgCGCGGUGG-CGa---GCG---------ACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 58867 0.66 0.660308
Target:  5'- cGCGCGCCAggcaguguuagucUCGUUgGCgaggugcgccuccauGGCGUCGGg -3'
miRNA:   3'- -CGCGCGGU-------------GGCGAgCGac-------------CCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 116628 0.66 0.654397
Target:  5'- gGCGCGCCcgcAgCGCUgGCcucGGCAgccgCGGg -3'
miRNA:   3'- -CGCGCGG---UgGCGAgCGac-CCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 98802 0.66 0.654397
Target:  5'- gGCGCGCCGCgGCgCGC--GGCA-CGa -3'
miRNA:   3'- -CGCGCGGUGgCGaGCGacCCGUaGCc -5'
6372 5' -61.3 NC_001847.1 + 86381 0.66 0.654397
Target:  5'- gGCGgGCCGCgGCg-GC-GGGCGcgCGGc -3'
miRNA:   3'- -CGCgCGGUGgCGagCGaCCCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 127340 0.66 0.654397
Target:  5'- gGCG-GCCgGCUGC-CGCggcagGGGCggCGGg -3'
miRNA:   3'- -CGCgCGG-UGGCGaGCGa----CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 122023 0.66 0.654397
Target:  5'- gGCGCGgCGCCGCccgCGCgccccGGCcgCGa -3'
miRNA:   3'- -CGCGCgGUGGCGa--GCGac---CCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 107139 0.66 0.654397
Target:  5'- aGCGCgGCaCGCCGCgCGCUGcaGCG-CGGc -3'
miRNA:   3'- -CGCG-CG-GUGGCGaGCGACc-CGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 78957 0.66 0.693611
Target:  5'- cCGCagGCUGgCGCUCGCgcagccucggGGGCGugcUCGGg -3'
miRNA:   3'- cGCG--CGGUgGCGAGCGa---------CCCGU---AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.