miRNA display CGI


Results 121 - 140 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 122023 0.66 0.654397
Target:  5'- gGCGCGgCGCCGCccgCGCgccccGGCcgCGa -3'
miRNA:   3'- -CGCGCgGUGGCGa--GCGac---CCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 28420 0.67 0.634661
Target:  5'- gGCGCGCaACCgGCgcccgCGCUGGcuacGCcgCGGc -3'
miRNA:   3'- -CGCGCGgUGG-CGa----GCGACC----CGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 30994 0.67 0.634661
Target:  5'- cCGCGCagGgCGCggCGCUGGGgcUCGGg -3'
miRNA:   3'- cGCGCGg-UgGCGa-GCGACCCguAGCC- -5'
6372 5' -61.3 NC_001847.1 + 63189 0.67 0.605059
Target:  5'- cGCGCGCCAuggccgagcCCGCgcgCGCUcuccGCGUCGu -3'
miRNA:   3'- -CGCGCGGU---------GGCGa--GCGAcc--CGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 51690 0.67 0.634661
Target:  5'- cGCGCGCCGUCGCgCGCcgu-CGUCGGg -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGacccGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 131602 0.67 0.634661
Target:  5'- --aCGCCGCCGCcgCGCUcGcGGCcguaGUCGGc -3'
miRNA:   3'- cgcGCGGUGGCGa-GCGA-C-CCG----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 101889 0.67 0.585407
Target:  5'- uGCGCGCgGaCCGCggcagCGgaGGcGCcgCGGc -3'
miRNA:   3'- -CGCGCGgU-GGCGa----GCgaCC-CGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 63654 0.67 0.634661
Target:  5'- cGCGCaCCGCCGCcaccgUUGCcGGGCucagcCGGu -3'
miRNA:   3'- -CGCGcGGUGGCG-----AGCGaCCCGua---GCC- -5'
6372 5' -61.3 NC_001847.1 + 27956 0.67 0.634661
Target:  5'- gGCGCGCgCGCuCGCggUCGCggugGaGGCGgccgCGGc -3'
miRNA:   3'- -CGCGCG-GUG-GCG--AGCGa---C-CCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 131991 0.67 0.592273
Target:  5'- uGUGCGUuaacugcugcuccaCGCUGCUCGCgGGGCugcUCGu -3'
miRNA:   3'- -CGCGCG--------------GUGGCGAGCGaCCCGu--AGCc -5'
6372 5' -61.3 NC_001847.1 + 85102 0.67 0.585407
Target:  5'- cGCGgcCGCCACCGCgcccCGC-GGGCugGUCa- -3'
miRNA:   3'- -CGC--GCGGUGGCGa---GCGaCCCG--UAGcc -5'
6372 5' -61.3 NC_001847.1 + 75249 0.67 0.585407
Target:  5'- cGCGCGCCGCCcucCUCGCcaacgcgGaGGCcgCGc -3'
miRNA:   3'- -CGCGCGGUGGc--GAGCGa------C-CCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 69449 0.67 0.585407
Target:  5'- aCGCGUCcggGCguaGCUCGCgGGGCA-CGGc -3'
miRNA:   3'- cGCGCGG---UGg--CGAGCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 14455 0.67 0.585407
Target:  5'- gGUGCGCgGCCGCggcCuCUGGGUcucCGGg -3'
miRNA:   3'- -CGCGCGgUGGCGa--GcGACCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 30773 0.67 0.605059
Target:  5'- uGCaGCGCCGCgCGUcUGC-GGGCG-CGGa -3'
miRNA:   3'- -CG-CGCGGUG-GCGaGCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 31165 0.67 0.605059
Target:  5'- gGCgGCGUCGaCGCcgCGCUGGGCGcCGa -3'
miRNA:   3'- -CG-CGCGGUgGCGa-GCGACCCGUaGCc -5'
6372 5' -61.3 NC_001847.1 + 34700 0.67 0.605059
Target:  5'- gGCGCGaggaCUugCGCgccgCGCUGGagcGCGUCGa -3'
miRNA:   3'- -CGCGC----GGugGCGa---GCGACC---CGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 107462 0.67 0.605059
Target:  5'- cGCGCGCCucagcccgacgcGCCGCgucgaGCaGGGC--CGGg -3'
miRNA:   3'- -CGCGCGG------------UGGCGag---CGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 49052 0.67 0.605059
Target:  5'- gGCGCGCagcuCACgGC-CGC-GGGCggCGGc -3'
miRNA:   3'- -CGCGCG----GUGgCGaGCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 134113 0.67 0.605059
Target:  5'- uCGUGCUGCUGCggCGCgccgcGGGCggCGGc -3'
miRNA:   3'- cGCGCGGUGGCGa-GCGa----CCCGuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.