miRNA display CGI


Results 21 - 40 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 3231 0.77 0.16938
Target:  5'- cGCGCGCCGCCcgcgccguGCUCGCcggcggcagGGGCGcCGGc -3'
miRNA:   3'- -CGCGCGGUGG--------CGAGCGa--------CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 43497 0.77 0.16938
Target:  5'- cCGCGCCGCCGUcgaUCGCuacUGGGCGgcgcgcgCGGg -3'
miRNA:   3'- cGCGCGGUGGCG---AGCG---ACCCGUa------GCC- -5'
6372 5' -61.3 NC_001847.1 + 106044 0.77 0.16938
Target:  5'- cGCGCGCCGCCcgcgccguGCUCGCcggcggcagGGGCGcCGGc -3'
miRNA:   3'- -CGCGCGGUGG--------CGAGCGa--------CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 119154 0.76 0.195887
Target:  5'- gGCGcCGCgGCCGC-CGCgGGGCggCGGg -3'
miRNA:   3'- -CGC-GCGgUGGCGaGCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 116353 0.76 0.18622
Target:  5'- cGCGCGCCGCCGC-CGC-GGaGCucgcgcuGUCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGaCC-CG-------UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 60800 0.76 0.200642
Target:  5'- cGCGCGCCACCaGCgcgcgCGcCUGcGGCAgCGGc -3'
miRNA:   3'- -CGCGCGGUGG-CGa----GC-GAC-CCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 119094 0.76 0.195887
Target:  5'- gGCGcCGCgGCCGC-CGCgGGGCggCGGg -3'
miRNA:   3'- -CGC-GCGgUGGCGaGCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 59831 0.76 0.177839
Target:  5'- uUGCGCCAgCGcCUCGCgGGGCAcCGGc -3'
miRNA:   3'- cGCGCGGUgGC-GAGCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 2222 0.76 0.182207
Target:  5'- gGC-CGCCagcGCCGCggCGCUGGGCG-CGGg -3'
miRNA:   3'- -CGcGCGG---UGGCGa-GCGACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 53868 0.76 0.205498
Target:  5'- gGCgGCGCCgACCGC-CGCggGGGCggCGGg -3'
miRNA:   3'- -CG-CGCGG-UGGCGaGCGa-CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 134018 0.76 0.186671
Target:  5'- -gGCGCCGCCGCUggUGCUGgaGGCcgCGGc -3'
miRNA:   3'- cgCGCGGUGGCGA--GCGAC--CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 31205 0.76 0.186671
Target:  5'- -gGCGCCGCCGCUggUGCUGgaGGCcgCGGc -3'
miRNA:   3'- cgCGCGGUGGCGA--GCGAC--CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 105035 0.76 0.182207
Target:  5'- gGC-CGCCagcGCCGCggCGCUGGGCG-CGGg -3'
miRNA:   3'- -CGcGCGG---UGGCGa-GCGACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 88617 0.76 0.200642
Target:  5'- cGCGCGCCGCCGCcgccccccgagCGCUGccgcuGGCAacgcUCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGa----------GCGAC-----CCGU----AGCC- -5'
6372 5' -61.3 NC_001847.1 + 125629 0.75 0.220678
Target:  5'- aGCGCGCCGcCCGCUCGgCUcGGGUccgcucGUCGcGg -3'
miRNA:   3'- -CGCGCGGU-GGCGAGC-GA-CCCG------UAGC-C- -5'
6372 5' -61.3 NC_001847.1 + 28524 0.75 0.215515
Target:  5'- aGCGCGCCGCCGC-CGCccGGCcgCGu -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGacCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 81166 0.75 0.225947
Target:  5'- gGCcCGCCgcGCCGCUCGgaGGGCucgCGGc -3'
miRNA:   3'- -CGcGCGG--UGGCGAGCgaCCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 86775 0.75 0.215515
Target:  5'- gGCgGCGCCACggucgugaCGCU-GCUGGGCAugUCGGa -3'
miRNA:   3'- -CG-CGCGGUG--------GCGAgCGACCCGU--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 131337 0.75 0.215515
Target:  5'- aGCGCGCCGCCGC-CGCccGGCcgCGu -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGacCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 20991 0.75 0.231322
Target:  5'- cGCGCGCCGCUGCaUGCUGGuGCGaacUCa- -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGACC-CGU---AGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.