miRNA display CGI


Results 61 - 80 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 5458 0.74 0.27201
Target:  5'- aGCGCGUCccgGCCGCUCuCUGcGGCggCGGc -3'
miRNA:   3'- -CGCGCGG---UGGCGAGcGAC-CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 13296 0.73 0.284646
Target:  5'- cGCGCGCUACgCGggCGCcGGGCugcaGUCGGc -3'
miRNA:   3'- -CGCGCGGUG-GCgaGCGaCCCG----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 134539 0.73 0.291136
Target:  5'- cGCGCGCCGCUGCggaGC--GGCcgCGGa -3'
miRNA:   3'- -CGCGCGGUGGCGag-CGacCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 107610 0.73 0.284646
Target:  5'- cCGCGCCGCCGUUCuC-GGGCGUCc- -3'
miRNA:   3'- cGCGCGGUGGCGAGcGaCCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 116539 0.73 0.282722
Target:  5'- cGCGCGCCgacGCCGCggacggCGCgcuaauggcgcacgUGGGCAUCu- -3'
miRNA:   3'- -CGCGCGG---UGGCGa-----GCG--------------ACCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 37349 0.73 0.284646
Target:  5'- cGCGCGCgACCGUggcggaGCUGGcGCGUCu- -3'
miRNA:   3'- -CGCGCGgUGGCGag----CGACC-CGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 51959 0.73 0.278271
Target:  5'- uGCGCGCCccccGCCGUcCGCcagcccgucGGGCGUUGGg -3'
miRNA:   3'- -CGCGCGG----UGGCGaGCGa--------CCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 86108 0.73 0.304462
Target:  5'- uGCGCGCCACCacgGCUCGCcgcuGGCAgaucUGGu -3'
miRNA:   3'- -CGCGCGGUGG---CGAGCGac--CCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 66776 0.73 0.291136
Target:  5'- aGCGCcgacguuuucGCCGgCGUaCGuCUGGGCGUCGGu -3'
miRNA:   3'- -CGCG----------CGGUgGCGaGC-GACCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 46117 0.73 0.278271
Target:  5'- aGCGCGCaCACgGCgUCGUaGGGCAUCc- -3'
miRNA:   3'- -CGCGCG-GUGgCG-AGCGaCCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 70690 0.73 0.291136
Target:  5'- cCGCGCCGCCGCggGCggcggcggGGGCGcccgCGGc -3'
miRNA:   3'- cGCGCGGUGGCGagCGa-------CCCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 31726 0.73 0.291136
Target:  5'- cGCGCGCCGCUGCggaGC--GGCcgCGGa -3'
miRNA:   3'- -CGCGCGGUGGCGag-CGacCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 18533 0.73 0.297741
Target:  5'- gGCGCGCCGCCGUcCGCgccGCAgagCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGaccCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 61469 0.73 0.304462
Target:  5'- cGCGCaGCagCGCCGCgUCGCUGGcGCAcagCGGc -3'
miRNA:   3'- -CGCG-CG--GUGGCG-AGCGACC-CGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 101824 0.73 0.278271
Target:  5'- aGCGCGCCGCCacgaacaacagGCUgcgcacaaaCGCggGGGCGUCGu -3'
miRNA:   3'- -CGCGCGGUGG-----------CGA---------GCGa-CCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 3732 0.73 0.284646
Target:  5'- aGCGCGCgGCCGcCUCGCggaucucgGGGCAg--- -3'
miRNA:   3'- -CGCGCGgUGGC-GAGCGa-------CCCGUagcc -5'
6372 5' -61.3 NC_001847.1 + 20038 0.73 0.278271
Target:  5'- uGCG-GCCGCCGC-C-CUGGGCG-CGGg -3'
miRNA:   3'- -CGCgCGGUGGCGaGcGACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 106545 0.73 0.284646
Target:  5'- aGCGCGCgGCCGcCUCGCggaucucgGGGCAg--- -3'
miRNA:   3'- -CGCGCGgUGGC-GAGCGa-------CCCGUagcc -5'
6372 5' -61.3 NC_001847.1 + 82376 0.73 0.284646
Target:  5'- cGCGCGCCGCgugaccUGCggGCUGGuCAUCGGc -3'
miRNA:   3'- -CGCGCGGUG------GCGagCGACCcGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 67857 0.73 0.278271
Target:  5'- gGCGCGCgGCuCGCgacgCGCUGGGaacggCGGc -3'
miRNA:   3'- -CGCGCGgUG-GCGa---GCGACCCgua--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.