miRNA display CGI


Results 81 - 100 of 652 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 3732 0.73 0.284646
Target:  5'- aGCGCGCgGCCGcCUCGCggaucucgGGGCAg--- -3'
miRNA:   3'- -CGCGCGgUGGC-GAGCGa-------CCCGUagcc -5'
6372 5' -61.3 NC_001847.1 + 10377 0.73 0.311299
Target:  5'- uCGgGUCGCCGCUCGCggcgGGGCcgCu- -3'
miRNA:   3'- cGCgCGGUGGCGAGCGa---CCCGuaGcc -5'
6372 5' -61.3 NC_001847.1 + 66776 0.73 0.291136
Target:  5'- aGCGCcgacguuuucGCCGgCGUaCGuCUGGGCGUCGGu -3'
miRNA:   3'- -CGCG----------CGGUgGCGaGC-GACCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 27327 0.72 0.354754
Target:  5'- cGCGcCGCCGCCGCcgCGCUuuGCcgCGGc -3'
miRNA:   3'- -CGC-GCGGUGGCGa-GCGAccCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 78321 0.72 0.339807
Target:  5'- gGCGCGCgCGCCGCggGCccggcuUGGGCGccgCGGc -3'
miRNA:   3'- -CGCGCG-GUGGCGagCG------ACCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 41862 0.72 0.325321
Target:  5'- uGCGCGCCGCCGacaUCGC-GGcGCGauaCGGc -3'
miRNA:   3'- -CGCGCGGUGGCg--AGCGaCC-CGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 101657 0.72 0.354754
Target:  5'- cCGCGCCGCCGC-CGC-GGaCAUCGc -3'
miRNA:   3'- cGCGCGGUGGCGaGCGaCCcGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 64421 0.72 0.325321
Target:  5'- cGCGCGCCACUGCcggCGCgucGuaGUCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGa--GCGac-CcgUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 68911 0.72 0.338337
Target:  5'- -aGCGCCGCCGCgcugagguucggCGCgGcGGCcgCGGg -3'
miRNA:   3'- cgCGCGGUGGCGa-----------GCGaC-CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 76398 0.72 0.354754
Target:  5'- cGCG-GCCGCCGC-CGCUgucGGGCcgcCGGa -3'
miRNA:   3'- -CGCgCGGUGGCGaGCGA---CCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 116173 0.72 0.339807
Target:  5'- cGgGCGCCGCgGCcgCGCUGGuCGUCGc -3'
miRNA:   3'- -CgCGCGGUGgCGa-GCGACCcGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 81030 0.72 0.318252
Target:  5'- gGCGaCGCCGCCGCggacUGCgggggcgacgUGGGCGUgGGc -3'
miRNA:   3'- -CGC-GCGGUGGCGa---GCG----------ACCCGUAgCC- -5'
6372 5' -61.3 NC_001847.1 + 119214 0.72 0.339807
Target:  5'- -gGCGCCGCgGCcacCGCgGGGCggCGGg -3'
miRNA:   3'- cgCGCGGUGgCGa--GCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 67490 0.72 0.318252
Target:  5'- cCGCGCCGCCGCgccccUCGacgaGGGCA-CGGu -3'
miRNA:   3'- cGCGCGGUGGCG-----AGCga--CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 31058 0.72 0.332506
Target:  5'- cCGCGCCGCCaacCGCUGGGgGcUCGGc -3'
miRNA:   3'- cGCGCGGUGGcgaGCGACCCgU-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 26178 0.72 0.321066
Target:  5'- cCGCGCCuccCUGCUCGCucaccgccgggguccUGGGCGggaagCGGg -3'
miRNA:   3'- cGCGCGGu--GGCGAGCG---------------ACCCGUa----GCC- -5'
6372 5' -61.3 NC_001847.1 + 61248 0.72 0.325321
Target:  5'- gGCuGgGCCAUCGCUgCGCgGGGCGcCGGc -3'
miRNA:   3'- -CG-CgCGGUGGCGA-GCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 80556 0.72 0.339807
Target:  5'- cGCGCGCCGCCagcgccgcccaGCcCGCgGGGcCGUCGu -3'
miRNA:   3'- -CGCGCGGUGG-----------CGaGCGaCCC-GUAGCc -5'
6372 5' -61.3 NC_001847.1 + 120579 0.72 0.332506
Target:  5'- cGCGCGcCCGCCaGCacccgCGCUGcGGCG-CGGu -3'
miRNA:   3'- -CGCGC-GGUGG-CGa----GCGAC-CCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 44900 0.72 0.334684
Target:  5'- aGCGCGUCacagccgcggcggcgGCCGCgaccgugUCGCUgGGGCGcUCGGg -3'
miRNA:   3'- -CGCGCGG---------------UGGCG-------AGCGA-CCCGU-AGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.