miRNA display CGI


Results 41 - 60 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 53022 0.75 0.236805
Target:  5'- gGCG-GCCGCUGCgCGCUcGGGCcUCGGc -3'
miRNA:   3'- -CGCgCGGUGGCGaGCGA-CCCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 101369 0.75 0.236805
Target:  5'- cGCGCGCUugCGC-CGCggGGGCugcccgCGGc -3'
miRNA:   3'- -CGCGCGGugGCGaGCGa-CCCGua----GCC- -5'
6372 5' -61.3 NC_001847.1 + 128139 0.74 0.240707
Target:  5'- aUGCGCgGCCGCUCgucgcguuuuaucuGCUGGGCGgcccgcCGGg -3'
miRNA:   3'- cGCGCGgUGGCGAG--------------CGACCCGUa-----GCC- -5'
6372 5' -61.3 NC_001847.1 + 130731 0.74 0.248096
Target:  5'- cGCGCGCUGCCGC-CGUc-GGCGUCGa -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGacCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 132760 0.74 0.248096
Target:  5'- aGCGCGUCACCGCcgucuUCGC-GGGCGcgCGa -3'
miRNA:   3'- -CGCGCGGUGGCG-----AGCGaCCCGUa-GCc -5'
6372 5' -61.3 NC_001847.1 + 61963 0.74 0.253906
Target:  5'- cGCGCGCCGugcCCGCcggCGCggcGGGCAUaaUGGg -3'
miRNA:   3'- -CGCGCGGU---GGCGa--GCGa--CCCGUA--GCC- -5'
6372 5' -61.3 NC_001847.1 + 52252 0.74 0.259828
Target:  5'- cGCGCGCCGCgGCUUGgCUGcGGCG-CGc -3'
miRNA:   3'- -CGCGCGGUGgCGAGC-GAC-CCGUaGCc -5'
6372 5' -61.3 NC_001847.1 + 82669 0.74 0.259828
Target:  5'- gGCGCGCCG-CGCUCguGCUGuGGUcaugaGUCGGg -3'
miRNA:   3'- -CGCGCGGUgGCGAG--CGAC-CCG-----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 105820 0.74 0.259828
Target:  5'- cGCGCGCucCACCGCgUCGC-GGGCcgCGc -3'
miRNA:   3'- -CGCGCG--GUGGCG-AGCGaCCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 12912 0.74 0.259828
Target:  5'- cGCGCGCCguGCCGC-CGCggGGGCGcgCGu -3'
miRNA:   3'- -CGCGCGG--UGGCGaGCGa-CCCGUa-GCc -5'
6372 5' -61.3 NC_001847.1 + 89589 0.74 0.259828
Target:  5'- cGCGaCGCCGCCGCggugaacgCGCUGcgcGGCA-CGGc -3'
miRNA:   3'- -CGC-GCGGUGGCGa-------GCGAC---CCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 3007 0.74 0.259828
Target:  5'- cGCGCGCucCACCGCgUCGC-GGGCcgCGc -3'
miRNA:   3'- -CGCGCG--GUGGCG-AGCGaCCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 36817 0.74 0.265863
Target:  5'- cGUGCGCCACCGg-CGCgccgacuggGGGCuggCGGa -3'
miRNA:   3'- -CGCGCGGUGGCgaGCGa--------CCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 125070 0.74 0.265863
Target:  5'- cGCGCGCgGCgGggCGCUGGGCccgcgCGGc -3'
miRNA:   3'- -CGCGCGgUGgCgaGCGACCCGua---GCC- -5'
6372 5' -61.3 NC_001847.1 + 60484 0.74 0.265863
Target:  5'- -gGCGCCGCCGCUuugugCGCgcgcGGGCcggCGGg -3'
miRNA:   3'- cgCGCGGUGGCGA-----GCGa---CCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 5458 0.74 0.27201
Target:  5'- aGCGCGUCccgGCCGCUCuCUGcGGCggCGGc -3'
miRNA:   3'- -CGCGCGG---UGGCGAGcGAC-CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 82741 0.74 0.27201
Target:  5'- cGCGCGCCGCC-CgCGCUGGaGCGcuugcCGGa -3'
miRNA:   3'- -CGCGCGGUGGcGaGCGACC-CGUa----GCC- -5'
6372 5' -61.3 NC_001847.1 + 66666 0.74 0.27201
Target:  5'- gGCGCGCUugCGCccgCGCggcgGGGCccCGGc -3'
miRNA:   3'- -CGCGCGGugGCGa--GCGa---CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 1583 0.74 0.27201
Target:  5'- cGCGCGCCAgCGCgcCGCUcGGGCcagcgcgCGGc -3'
miRNA:   3'- -CGCGCGGUgGCGa-GCGA-CCCGua-----GCC- -5'
6372 5' -61.3 NC_001847.1 + 80462 0.74 0.27201
Target:  5'- gGCGcCGCCGCCGC-CGUcGGGCcgCGc -3'
miRNA:   3'- -CGC-GCGGUGGCGaGCGaCCCGuaGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.