miRNA display CGI


Results 81 - 100 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 61469 0.73 0.304462
Target:  5'- cGCGCaGCagCGCCGCgUCGCUGGcGCAcagCGGc -3'
miRNA:   3'- -CGCG-CG--GUGGCG-AGCGACC-CGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 10377 0.73 0.311299
Target:  5'- uCGgGUCGCCGCUCGCggcgGGGCcgCu- -3'
miRNA:   3'- cGCgCGGUGGCGAGCGa---CCCGuaGcc -5'
6372 5' -61.3 NC_001847.1 + 97188 0.73 0.314066
Target:  5'- cGCGgGCCAUggcuaccggugcgguUGCUCGCcgGGGCgcgaGUCGGg -3'
miRNA:   3'- -CGCgCGGUG---------------GCGAGCGa-CCCG----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 81030 0.72 0.318252
Target:  5'- gGCGaCGCCGCCGCggacUGCgggggcgacgUGGGCGUgGGc -3'
miRNA:   3'- -CGC-GCGGUGGCGa---GCG----------ACCCGUAgCC- -5'
6372 5' -61.3 NC_001847.1 + 96309 0.72 0.318252
Target:  5'- aGUGCGCCGCgGgggaUCGCUcGGUGUCGGu -3'
miRNA:   3'- -CGCGCGGUGgCg---AGCGAcCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 117025 0.72 0.318252
Target:  5'- cGCGCGCCccaccGCCGCggagcUGCUGGaGCAccccgucuUCGGu -3'
miRNA:   3'- -CGCGCGG-----UGGCGa----GCGACC-CGU--------AGCC- -5'
6372 5' -61.3 NC_001847.1 + 67490 0.72 0.318252
Target:  5'- cCGCGCCGCCGCgccccUCGacgaGGGCA-CGGu -3'
miRNA:   3'- cGCGCGGUGGCG-----AGCga--CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 94212 0.72 0.318252
Target:  5'- uGCGCGCgGCggaGCUCGCggcgGGGCGcccgcgCGGc -3'
miRNA:   3'- -CGCGCGgUGg--CGAGCGa---CCCGUa-----GCC- -5'
6372 5' -61.3 NC_001847.1 + 128991 0.72 0.321066
Target:  5'- cCGCGCCuccCUGCUCGCucaccgccgggguccUGGGCGggaagCGGg -3'
miRNA:   3'- cGCGCGGu--GGCGAGCG---------------ACCCGUa----GCC- -5'
6372 5' -61.3 NC_001847.1 + 26178 0.72 0.321066
Target:  5'- cCGCGCCuccCUGCUCGCucaccgccgggguccUGGGCGggaagCGGg -3'
miRNA:   3'- cGCGCGGu--GGCGAGCG---------------ACCCGUa----GCC- -5'
6372 5' -61.3 NC_001847.1 + 61248 0.72 0.325321
Target:  5'- gGCuGgGCCAUCGCUgCGCgGGGCGcCGGc -3'
miRNA:   3'- -CG-CgCGGUGGCGA-GCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 45818 0.72 0.325321
Target:  5'- gGCGggaGCUGCCGCccgggccacUCGCUGGGCGgcaCGGc -3'
miRNA:   3'- -CGCg--CGGUGGCG---------AGCGACCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 32124 0.72 0.325321
Target:  5'- cGCcCGCCGCCGg-CGCUGGGCGcCGc -3'
miRNA:   3'- -CGcGCGGUGGCgaGCGACCCGUaGCc -5'
6372 5' -61.3 NC_001847.1 + 64421 0.72 0.325321
Target:  5'- cGCGCGCCACUGCcggCGCgucGuaGUCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGa--GCGac-CcgUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 41862 0.72 0.325321
Target:  5'- uGCGCGCCGCCGacaUCGC-GGcGCGauaCGGc -3'
miRNA:   3'- -CGCGCGGUGGCg--AGCGaCC-CGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 120579 0.72 0.332506
Target:  5'- cGCGCGcCCGCCaGCacccgCGCUGcGGCG-CGGu -3'
miRNA:   3'- -CGCGC-GGUGG-CGa----GCGAC-CCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 10852 0.72 0.332506
Target:  5'- gGCGCGUgGCCGaggCGCggcGGGCG-CGGg -3'
miRNA:   3'- -CGCGCGgUGGCga-GCGa--CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 89306 0.72 0.332506
Target:  5'- aGCGCGaCUACUGCUucuUGCUGGGguUucCGGg -3'
miRNA:   3'- -CGCGC-GGUGGCGA---GCGACCCguA--GCC- -5'
6372 5' -61.3 NC_001847.1 + 31058 0.72 0.332506
Target:  5'- cCGCGCCGCCaacCGCUGGGgGcUCGGc -3'
miRNA:   3'- cGCGCGGUGGcgaGCGACCCgU-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 74401 0.72 0.332506
Target:  5'- cGCGCgGCCGCCGCgcgCGCgcGGGCcgCc- -3'
miRNA:   3'- -CGCG-CGGUGGCGa--GCGa-CCCGuaGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.