miRNA display CGI


Results 101 - 120 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 133871 0.72 0.332506
Target:  5'- cCGCGCCGCCaacCGCUGGGgGcUCGGc -3'
miRNA:   3'- cGCGCGGUGGcgaGCGACCCgU-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 44900 0.72 0.334684
Target:  5'- aGCGCGUCacagccgcggcggcgGCCGCgaccgugUCGCUgGGGCGcUCGGg -3'
miRNA:   3'- -CGCGCGG---------------UGGCG-------AGCGA-CCCGU-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 68911 0.72 0.338337
Target:  5'- -aGCGCCGCCGCgcugagguucggCGCgGcGGCcgCGGg -3'
miRNA:   3'- cgCGCGGUGGCGa-----------GCGaC-CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 78321 0.72 0.339807
Target:  5'- gGCGCGCgCGCCGCggGCccggcuUGGGCGccgCGGc -3'
miRNA:   3'- -CGCGCG-GUGGCGagCG------ACCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 119214 0.72 0.339807
Target:  5'- -gGCGCCGCgGCcacCGCgGGGCggCGGg -3'
miRNA:   3'- cgCGCGGUGgCGa--GCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 80556 0.72 0.339807
Target:  5'- cGCGCGCCGCCagcgccgcccaGCcCGCgGGGcCGUCGu -3'
miRNA:   3'- -CGCGCGGUGG-----------CGaGCGaCCC-GUAGCc -5'
6372 5' -61.3 NC_001847.1 + 58807 0.72 0.339807
Target:  5'- -aGCGCCugCGCcggCGcCUGGGCcggugcgaggGUCGGc -3'
miRNA:   3'- cgCGCGGugGCGa--GC-GACCCG----------UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 116173 0.72 0.339807
Target:  5'- cGgGCGCCGCgGCcgCGCUGGuCGUCGc -3'
miRNA:   3'- -CgCGCGGUGgCGa-GCGACCcGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 35561 0.72 0.339807
Target:  5'- gGCGCGCgACCGCgaCGa-GGGCGcCGGg -3'
miRNA:   3'- -CGCGCGgUGGCGa-GCgaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 94176 0.72 0.347223
Target:  5'- uGgGCGCgGCCGcCUCGCgcGGGCAguUCGa -3'
miRNA:   3'- -CgCGCGgUGGC-GAGCGa-CCCGU--AGCc -5'
6372 5' -61.3 NC_001847.1 + 60321 0.72 0.347223
Target:  5'- cGCGCGCCACCuGCUCGC---GCGUgaGGa -3'
miRNA:   3'- -CGCGCGGUGG-CGAGCGaccCGUAg-CC- -5'
6372 5' -61.3 NC_001847.1 + 85985 0.72 0.347223
Target:  5'- gGCGCGUgACCGUgguccgCGCgccgaUGGGC-UCGGg -3'
miRNA:   3'- -CGCGCGgUGGCGa-----GCG-----ACCCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 101657 0.72 0.354754
Target:  5'- cCGCGCCGCCGC-CGC-GGaCAUCGc -3'
miRNA:   3'- cGCGCGGUGGCGaGCGaCCcGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 53567 0.72 0.354754
Target:  5'- cCGCGCuCGCCGC--GCUGGGCGacgUGGa -3'
miRNA:   3'- cGCGCG-GUGGCGagCGACCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 76398 0.72 0.354754
Target:  5'- cGCG-GCCGCCGC-CGCUgucGGGCcgcCGGa -3'
miRNA:   3'- -CGCgCGGUGGCGaGCGA---CCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 27327 0.72 0.354754
Target:  5'- cGCGcCGCCGCCGCcgCGCUuuGCcgCGGc -3'
miRNA:   3'- -CGC-GCGGUGGCGa-GCGAccCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 121765 0.72 0.354754
Target:  5'- gGCGCGCCcggacgugcgcGCCGUUCGCggcUGGaGCGUCc- -3'
miRNA:   3'- -CGCGCGG-----------UGGCGAGCG---ACC-CGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 48420 0.72 0.354754
Target:  5'- aCGCGUCGCCGg-CGCUcGGGUAcUCGGu -3'
miRNA:   3'- cGCGCGGUGGCgaGCGA-CCCGU-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 80182 0.72 0.354754
Target:  5'- aGUGCGCCGCCGcCUCuGC-GGGCGggugCGc -3'
miRNA:   3'- -CGCGCGGUGGC-GAG-CGaCCCGUa---GCc -5'
6372 5' -61.3 NC_001847.1 + 130140 0.72 0.354754
Target:  5'- cGCGcCGCCGCCGCcgCGCUuuGCcgCGGc -3'
miRNA:   3'- -CGC-GCGGUGGCGa-GCGAccCGuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.