miRNA display CGI


Results 121 - 140 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 20186 0.71 0.360095
Target:  5'- gGCGCGCCgguaugcgaauaccACCGcCUCGUUGGGaucuUUGGc -3'
miRNA:   3'- -CGCGCGG--------------UGGC-GAGCGACCCgu--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 34392 0.71 0.3624
Target:  5'- gGCGgcCGCCGCCGCggcagacgcggCGCUggGGGCggCGGa -3'
miRNA:   3'- -CGC--GCGGUGGCGa----------GCGA--CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 33886 0.71 0.3624
Target:  5'- -gGCGCCGCCGCgCGU--GGCcgCGGg -3'
miRNA:   3'- cgCGCGGUGGCGaGCGacCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 30408 0.71 0.3624
Target:  5'- gGCGCugGCCGCCggcaaGCUCGUggcGGGCG-CGGa -3'
miRNA:   3'- -CGCG--CGGUGG-----CGAGCGa--CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 79923 0.71 0.3624
Target:  5'- -aGCGUCGCCGCcacgaaguacgUCGC-GGGCAUCa- -3'
miRNA:   3'- cgCGCGGUGGCG-----------AGCGaCCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 64448 0.71 0.3624
Target:  5'- gGCGCccccGCCGCCGCcCGCgGcGGCG-CGGg -3'
miRNA:   3'- -CGCG----CGGUGGCGaGCGaC-CCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 115575 0.71 0.3624
Target:  5'- aCGgGCCGCgGCgaUCGC-GGGCGUCGa -3'
miRNA:   3'- cGCgCGGUGgCG--AGCGaCCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 87863 0.71 0.3624
Target:  5'- cGCGgGCCugUGgUCGCUGuGGCcgCGcGg -3'
miRNA:   3'- -CGCgCGGugGCgAGCGAC-CCGuaGC-C- -5'
6372 5' -61.3 NC_001847.1 + 3891 0.71 0.3624
Target:  5'- cGCGCGgCGCCGCggcguagccagCGC-GGGCGcCGGu -3'
miRNA:   3'- -CGCGCgGUGGCGa----------GCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 38053 0.71 0.3624
Target:  5'- cCGCGCCGCCGCggcuaaGCUGcGCG-CGGc -3'
miRNA:   3'- cGCGCGGUGGCGag----CGACcCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 106704 0.71 0.3624
Target:  5'- cGCGCGgCGCCGCggcguagccagCGC-GGGCGcCGGu -3'
miRNA:   3'- -CGCGCgGUGGCGa----------GCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 105708 0.71 0.369379
Target:  5'- gGCgGCGCCACgccccagCGCUCGCUGGcGCGcaGGu -3'
miRNA:   3'- -CG-CGCGGUG-------GCGAGCGACC-CGUagCC- -5'
6372 5' -61.3 NC_001847.1 + 30212 0.71 0.37016
Target:  5'- cGCGCGCCgaaGCCGCgcgCGCccGGGCcgaGGu -3'
miRNA:   3'- -CGCGCGG---UGGCGa--GCGa-CCCGuagCC- -5'
6372 5' -61.3 NC_001847.1 + 3994 0.71 0.37016
Target:  5'- gGCGCGCgGCC-C-CGCgGGGCGcCGGg -3'
miRNA:   3'- -CGCGCGgUGGcGaGCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 47845 0.71 0.37016
Target:  5'- uGCGCGCaaaucgGCCGCggcCGC-GGGcCGUCGGc -3'
miRNA:   3'- -CGCGCGg-----UGGCGa--GCGaCCC-GUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 86263 0.71 0.37016
Target:  5'- cUGCGCCcCCGCgCGCUGGGUuuuUCa- -3'
miRNA:   3'- cGCGCGGuGGCGaGCGACCCGu--AGcc -5'
6372 5' -61.3 NC_001847.1 + 105089 0.71 0.37016
Target:  5'- cCGCGCCACCGCgccggcaacgUCGCccacGGCcgCGGc -3'
miRNA:   3'- cGCGCGGUGGCG----------AGCGac--CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 134093 0.71 0.37016
Target:  5'- -gGCGCCGCCGCUUGCUcuGGCGa--- -3'
miRNA:   3'- cgCGCGGUGGCGAGCGAc-CCGUagcc -5'
6372 5' -61.3 NC_001847.1 + 43796 0.71 0.37016
Target:  5'- cGCGCGCCggcgcGCCGgUCGa-GGGCGaCGGc -3'
miRNA:   3'- -CGCGCGG-----UGGCgAGCgaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 22181 0.71 0.37016
Target:  5'- uCGCGCCGCgaaugCGCgggCGCUGGGCcgUGc -3'
miRNA:   3'- cGCGCGGUG-----GCGa--GCGACCCGuaGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.