miRNA display CGI


Results 61 - 80 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 77969 0.66 0.664245
Target:  5'- cGCGUGCUuuucGCUGCUgGC-GGGCggCGa -3'
miRNA:   3'- -CGCGCGG----UGGCGAgCGaCCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 104948 0.66 0.664245
Target:  5'- gGCGCGCgCGCCGC--GCaccGCGUCGGc -3'
miRNA:   3'- -CGCGCG-GUGGCGagCGaccCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 96562 0.66 0.664245
Target:  5'- cGCGCGCgGuCUGCUgGCcgugugccUGGGCGccCGGc -3'
miRNA:   3'- -CGCGCGgU-GGCGAgCG--------ACCCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 40873 0.66 0.664245
Target:  5'- gGCGCGCCcaauGCgCGUggUCGUaggucgcaaacaUGGGCAcgCGGg -3'
miRNA:   3'- -CGCGCGG----UG-GCG--AGCG------------ACCCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 38047 0.66 0.664245
Target:  5'- cCGCGCCGCCGCUCGCa--------- -3'
miRNA:   3'- cGCGCGGUGGCGAGCGacccguagcc -5'
6372 5' -61.3 NC_001847.1 + 2540 0.66 0.664245
Target:  5'- cGCGgGaCCGCUGCUCuccgGC-GGGCugucuUCGGc -3'
miRNA:   3'- -CGCgC-GGUGGCGAG----CGaCCCGu----AGCC- -5'
6372 5' -61.3 NC_001847.1 + 73884 0.66 0.664245
Target:  5'- cCGCGCgCGCCGCggaCGCggacGGCGUUGc -3'
miRNA:   3'- cGCGCG-GUGGCGa--GCGac--CCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 89703 0.66 0.664245
Target:  5'- cGCGCGCCGCgaCGggCGCccUGGGC-UCa- -3'
miRNA:   3'- -CGCGCGGUG--GCgaGCG--ACCCGuAGcc -5'
6372 5' -61.3 NC_001847.1 + 96184 0.66 0.664245
Target:  5'- cGCGgcCGCCGCCauggcGCUCGCggcccccGGGCc-CGGg -3'
miRNA:   3'- -CGC--GCGGUGG-----CGAGCGa------CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 132712 0.66 0.664245
Target:  5'- gGCGgcccUGCCgGCCGC-CGCggGGGCcccUCGGg -3'
miRNA:   3'- -CGC----GCGG-UGGCGaGCGa-CCCGu--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 6358 0.66 0.664245
Target:  5'- cCGCGCCGCgggcguaGC-CGCUGcGGCAgcagaaggCGGc -3'
miRNA:   3'- cGCGCGGUGg------CGaGCGAC-CCGUa-------GCC- -5'
6372 5' -61.3 NC_001847.1 + 87284 0.66 0.664245
Target:  5'- uGCGCGCCgACgGCcCGC--GGCcgCGGc -3'
miRNA:   3'- -CGCGCGG-UGgCGaGCGacCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 75830 0.66 0.664245
Target:  5'- -nGCGCCGCCgGCgccgCGCcuggcacccUGGGUA-CGGu -3'
miRNA:   3'- cgCGCGGUGG-CGa---GCG---------ACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 75158 0.66 0.664245
Target:  5'- uGCGUGCUagGCCGC-CGCgucGGGacCAUCGu -3'
miRNA:   3'- -CGCGCGG--UGGCGaGCGa--CCC--GUAGCc -5'
6372 5' -61.3 NC_001847.1 + 95523 0.66 0.664245
Target:  5'- gGCGCGCCAg-GCUUGCcccugGGGC-UgGGg -3'
miRNA:   3'- -CGCGCGGUggCGAGCGa----CCCGuAgCC- -5'
6372 5' -61.3 NC_001847.1 + 53295 0.66 0.664245
Target:  5'- cGCGCGCUcgaucGCCGCcagUGCggcGGGCGacaGGa -3'
miRNA:   3'- -CGCGCGG-----UGGCGa--GCGa--CCCGUag-CC- -5'
6372 5' -61.3 NC_001847.1 + 13433 0.66 0.664245
Target:  5'- aGCgGgGCCugCGCUgGCUguaucuagcGGGCGcgcaccugcUCGGg -3'
miRNA:   3'- -CG-CgCGGugGCGAgCGA---------CCCGU---------AGCC- -5'
6372 5' -61.3 NC_001847.1 + 78342 0.66 0.664245
Target:  5'- gGCGCGCCGgccCCGUgagCGCgacgaacGGCGggCGGg -3'
miRNA:   3'- -CGCGCGGU---GGCGa--GCGac-----CCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 66361 0.66 0.664245
Target:  5'- cGCGCgGCCGCCGCggCGaUGGaGC-UCGc -3'
miRNA:   3'- -CGCG-CGGUGGCGa-GCgACC-CGuAGCc -5'
6372 5' -61.3 NC_001847.1 + 43319 0.66 0.663261
Target:  5'- cGCGCGCUGCCGUgcugccaUCGCcGcGCggCGGc -3'
miRNA:   3'- -CGCGCGGUGGCG-------AGCGaCcCGuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.