miRNA display CGI


Results 81 - 100 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 27618 0.66 0.662277
Target:  5'- gGCGCgGCCAUCGUUCcucguccGCUcGGCAcucgcgcUCGGg -3'
miRNA:   3'- -CGCG-CGGUGGCGAG-------CGAcCCGU-------AGCC- -5'
6372 5' -61.3 NC_001847.1 + 7364 0.66 0.661293
Target:  5'- aGCGCGCUGCUGCcggcgcCGCUGacaguggaggacguGGCGcgcUCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGa-----GCGAC--------------CCGU---AGCC- -5'
6372 5' -61.3 NC_001847.1 + 58867 0.66 0.660308
Target:  5'- cGCGCGCCAggcaguguuagucUCGUUgGCgaggugcgccuccauGGCGUCGGg -3'
miRNA:   3'- -CGCGCGGU-------------GGCGAgCGac-------------CCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 27982 0.66 0.654397
Target:  5'- uCGUGgCGCCGC--GCUGGGCcgCGc -3'
miRNA:   3'- cGCGCgGUGGCGagCGACCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 46206 0.66 0.654397
Target:  5'- gGCG-GCgGCCGC-CGCcGGGCcggccgCGGg -3'
miRNA:   3'- -CGCgCGgUGGCGaGCGaCCCGua----GCC- -5'
6372 5' -61.3 NC_001847.1 + 42873 0.66 0.654397
Target:  5'- cCGCG-CACCGCgccaCGCuagUGGGCGccuuugcgacUCGGg -3'
miRNA:   3'- cGCGCgGUGGCGa---GCG---ACCCGU----------AGCC- -5'
6372 5' -61.3 NC_001847.1 + 112534 0.66 0.654397
Target:  5'- uGCGCgGCCACuCGCUUGCcacgcgaccGGGCGggcccugcccCGGg -3'
miRNA:   3'- -CGCG-CGGUG-GCGAGCGa--------CCCGUa---------GCC- -5'
6372 5' -61.3 NC_001847.1 + 83729 0.66 0.654397
Target:  5'- -aGC-CCGCCGCUCaCUcGGGCGcuaUUGGa -3'
miRNA:   3'- cgCGcGGUGGCGAGcGA-CCCGU---AGCC- -5'
6372 5' -61.3 NC_001847.1 + 122023 0.66 0.654397
Target:  5'- gGCGCGgCGCCGCccgCGCgccccGGCcgCGa -3'
miRNA:   3'- -CGCGCgGUGGCGa--GCGac---CCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 127340 0.66 0.654397
Target:  5'- gGCG-GCCgGCUGC-CGCggcagGGGCggCGGg -3'
miRNA:   3'- -CGCgCGG-UGGCGaGCGa----CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 86381 0.66 0.654397
Target:  5'- gGCGgGCCGCgGCg-GC-GGGCGcgCGGc -3'
miRNA:   3'- -CGCgCGGUGgCGagCGaCCCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 98802 0.66 0.654397
Target:  5'- gGCGCGCCGCgGCgCGC--GGCA-CGa -3'
miRNA:   3'- -CGCGCGGUGgCGaGCGacCCGUaGCc -5'
6372 5' -61.3 NC_001847.1 + 116628 0.66 0.654397
Target:  5'- gGCGCGCCcgcAgCGCUgGCcucGGCAgccgCGGg -3'
miRNA:   3'- -CGCGCGG---UgGCGAgCGac-CCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 59115 0.66 0.654397
Target:  5'- uCGuCGCCGCCGC-CGCUccGGCcgcgCGGg -3'
miRNA:   3'- cGC-GCGGUGGCGaGCGAc-CCGua--GCC- -5'
6372 5' -61.3 NC_001847.1 + 95382 0.66 0.654397
Target:  5'- cCGCGCCGCCgGCUCugagGCc-GGCGcCGGg -3'
miRNA:   3'- cGCGCGGUGG-CGAG----CGacCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 9721 0.66 0.654397
Target:  5'- uGCGCgGCCACuCGCUUGCcacgcgaccGGGCGggcccugcccCGGg -3'
miRNA:   3'- -CGCG-CGGUG-GCGAGCGa--------CCCGUa---------GCC- -5'
6372 5' -61.3 NC_001847.1 + 30462 0.66 0.654397
Target:  5'- gGUGgGCCGCUuucuGCagCGCUGGGacgcgAUCGGc -3'
miRNA:   3'- -CGCgCGGUGG----CGa-GCGACCCg----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 68516 0.66 0.654397
Target:  5'- aCGCGCCcCCGC-CGUcGGGaucguccucgcCGUCGGu -3'
miRNA:   3'- cGCGCGGuGGCGaGCGaCCC-----------GUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 118325 0.66 0.654397
Target:  5'- cCGCGCCACCGaucCGgaguUUGGGCucuUUGGc -3'
miRNA:   3'- cGCGCGGUGGCga-GC----GACCCGu--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 107139 0.66 0.654397
Target:  5'- aGCGCgGCaCGCCGCgCGCUGcaGCG-CGGc -3'
miRNA:   3'- -CGCG-CG-GUGGCGaGCGACc-CGUaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.