miRNA display CGI


Results 101 - 120 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 122023 0.66 0.654397
Target:  5'- gGCGCGgCGCCGCccgCGCgccccGGCcgCGa -3'
miRNA:   3'- -CGCGCgGUGGCGa--GCGac---CCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 132037 0.66 0.653412
Target:  5'- -gGCGCUcuaccugGCCGCuaUCGUgggGGGCGUCa- -3'
miRNA:   3'- cgCGCGG-------UGGCG--AGCGa--CCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 49806 0.66 0.653412
Target:  5'- gGUGCGCUGCUGCUgggcgCGCUGGcggccuggacgcuGCAggCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGA-----GCGACC-------------CGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 70284 0.66 0.653412
Target:  5'- cGCGCGCCuggcggggucgcgGCgCGCcgCGCUGGuC-UCGGa -3'
miRNA:   3'- -CGCGCGG-------------UG-GCGa-GCGACCcGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 131827 0.66 0.65144
Target:  5'- cUGCGCgGCCGCcuaccCGCuguaccugaaaaucUGGGCGUgGGu -3'
miRNA:   3'- cGCGCGgUGGCGa----GCG--------------ACCCGUAgCC- -5'
6372 5' -61.3 NC_001847.1 + 96940 0.66 0.644534
Target:  5'- aGCGgGUCGCCGCUaGCgGcGGCAaagucCGGg -3'
miRNA:   3'- -CGCgCGGUGGCGAgCGaC-CCGUa----GCC- -5'
6372 5' -61.3 NC_001847.1 + 118749 0.66 0.644534
Target:  5'- aGCGCuGCCACaCGCgcgGUUGuGGCGcgCGGu -3'
miRNA:   3'- -CGCG-CGGUG-GCGag-CGAC-CCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 30957 0.66 0.644534
Target:  5'- cGCGUGCUGCCGg-CGCUcgacGGGCGcaaGGa -3'
miRNA:   3'- -CGCGCGGUGGCgaGCGA----CCCGUag-CC- -5'
6372 5' -61.3 NC_001847.1 + 58078 0.66 0.644534
Target:  5'- cGCGCGCgCGCCGCa-GCgGGuGCcgCGc -3'
miRNA:   3'- -CGCGCG-GUGGCGagCGaCC-CGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 78070 0.66 0.644534
Target:  5'- aGCGCugGCCGCCGC--GCUGGGguUg-- -3'
miRNA:   3'- -CGCG--CGGUGGCGagCGACCCguAgcc -5'
6372 5' -61.3 NC_001847.1 + 5764 0.66 0.644534
Target:  5'- gGCGCGCCAaCGCgaagCGC--GGCGUCu- -3'
miRNA:   3'- -CGCGCGGUgGCGa---GCGacCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 71399 0.66 0.644534
Target:  5'- cCGCGCCGCCagGCggCGCUGuuGC-UCGGc -3'
miRNA:   3'- cGCGCGGUGG--CGa-GCGACc-CGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 31854 0.66 0.644534
Target:  5'- cGCGCGCCcggGCUCGCc-GGCGUUGc -3'
miRNA:   3'- -CGCGCGGuggCGAGCGacCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 121240 0.66 0.644534
Target:  5'- aGCGCcccaGCCACCG-UCGUggcacUGGGCuccCGGc -3'
miRNA:   3'- -CGCG----CGGUGGCgAGCG-----ACCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 40186 0.66 0.644534
Target:  5'- cGCGCggcggaacgGCCGCCGaugcggUCG-UGGGCGucUCGGg -3'
miRNA:   3'- -CGCG---------CGGUGGCg-----AGCgACCCGU--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 57693 0.66 0.644534
Target:  5'- uGgGCGCCGCgggUGCcgCGCUcucgaccgugucGGGCAUCGc -3'
miRNA:   3'- -CgCGCGGUG---GCGa-GCGA------------CCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 133770 0.66 0.644534
Target:  5'- cGCGUGCUGCCGg-CGCUcgacGGGCGcaaGGa -3'
miRNA:   3'- -CGCGCGGUGGCgaGCGA----CCCGUag-CC- -5'
6372 5' -61.3 NC_001847.1 + 35611 0.66 0.644534
Target:  5'- uGCGCaucacGCCGCCGCcggcggCGCUGGGgcCAgcgcUGGa -3'
miRNA:   3'- -CGCG-----CGGUGGCGa-----GCGACCC--GUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 47 0.66 0.644534
Target:  5'- cGCGCGgCGCgUGCaUUGCggcGGGCGggggCGGg -3'
miRNA:   3'- -CGCGCgGUG-GCG-AGCGa--CCCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 91683 0.66 0.644534
Target:  5'- cGCGCGCUcggcgACCGCgccgUCGCcccGGGUcgCGa -3'
miRNA:   3'- -CGCGCGG-----UGGCG----AGCGa--CCCGuaGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.