miRNA display CGI


Results 61 - 80 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 13433 0.66 0.664245
Target:  5'- aGCgGgGCCugCGCUgGCUguaucuagcGGGCGcgcaccugcUCGGg -3'
miRNA:   3'- -CG-CgCGGugGCGAgCGA---------CCCGU---------AGCC- -5'
6372 5' -61.3 NC_001847.1 + 13535 0.66 0.683859
Target:  5'- aGCG-GCagcaACCGC-CGCcgGGGCGgcgCGGu -3'
miRNA:   3'- -CGCgCGg---UGGCGaGCGa-CCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 13880 0.69 0.46264
Target:  5'- aCGCGgCACUGC-CGCUGGuGCGccCGGu -3'
miRNA:   3'- cGCGCgGUGGCGaGCGACC-CGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 14148 0.68 0.536927
Target:  5'- cCGCGCCuggGCgGC-CGCUaGGGCGaCGGc -3'
miRNA:   3'- cGCGCGG---UGgCGaGCGA-CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 14316 0.69 0.508504
Target:  5'- cCGCucCCGCUGCUCGCggugGGGC--CGGg -3'
miRNA:   3'- cGCGc-GGUGGCGAGCGa---CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 14405 0.68 0.546526
Target:  5'- gGCGUcgagGCC-CCGCUCGCagcGGGUcgCGa -3'
miRNA:   3'- -CGCG----CGGuGGCGAGCGa--CCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 14451 0.69 0.508504
Target:  5'- aGCGCGCgGCCGCgcUGCUcGGCGUgCGc -3'
miRNA:   3'- -CGCGCGgUGGCGa-GCGAcCCGUA-GCc -5'
6372 5' -61.3 NC_001847.1 + 14455 0.67 0.585407
Target:  5'- gGUGCGCgGCCGCggcCuCUGGGUcucCGGg -3'
miRNA:   3'- -CGCGCGgUGGCGa--GcGACCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 14557 0.67 0.59522
Target:  5'- cCGCGCCGCagCGCgggUGCUggcGGGCGcgCGGc -3'
miRNA:   3'- cGCGCGGUG--GCGa--GCGA---CCCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 14648 0.77 0.16938
Target:  5'- cGCGCGCCGCuCGCUgcgaGCgGGGCgcguGUCGGc -3'
miRNA:   3'- -CGCGCGGUG-GCGAg---CGaCCCG----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 15213 0.67 0.624786
Target:  5'- aGCcauCGUCGCCGCggucgaGCUGG-CGUCGGc -3'
miRNA:   3'- -CGc--GCGGUGGCGag----CGACCcGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 15346 0.68 0.546526
Target:  5'- cGCGCGCaguGCCGCuUCGCUcacuuuacgGGGCAg--- -3'
miRNA:   3'- -CGCGCGg--UGGCG-AGCGA---------CCCGUagcc -5'
6372 5' -61.3 NC_001847.1 + 15552 0.69 0.49917
Target:  5'- gGUGCGCgCGCgGC-CGUcGGGCcgCGGc -3'
miRNA:   3'- -CGCGCG-GUGgCGaGCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 15630 0.69 0.471644
Target:  5'- cGCG-GCCGCCGCcccUCcggGCUcGGGC-UCGGg -3'
miRNA:   3'- -CGCgCGGUGGCG---AG---CGA-CCCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 16247 0.68 0.534058
Target:  5'- aGUGUGCCAgCGUucaguguaguuguaUCGC--GGCAUCGGg -3'
miRNA:   3'- -CGCGCGGUgGCG--------------AGCGacCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 16781 0.66 0.693611
Target:  5'- cCGCGCCGCaCG---GCgGGGuCAUCGGg -3'
miRNA:   3'- cGCGCGGUG-GCgagCGaCCC-GUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 16897 0.66 0.683859
Target:  5'- cGCuGCGUCGCCGguCUCGCgcGGGCG--GGa -3'
miRNA:   3'- -CG-CGCGGUGGC--GAGCGa-CCCGUagCC- -5'
6372 5' -61.3 NC_001847.1 + 17341 0.7 0.444908
Target:  5'- -gGCGCCuucuAgCGCUgGCUGGGguUCGa -3'
miRNA:   3'- cgCGCGG----UgGCGAgCGACCCguAGCc -5'
6372 5' -61.3 NC_001847.1 + 17866 0.69 0.49917
Target:  5'- -aGCGCCGCCgGgUCGCccguccucGGGCGgggCGGg -3'
miRNA:   3'- cgCGCGGUGG-CgAGCGa-------CCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 18533 0.73 0.297741
Target:  5'- gGCGCGCCGCCGUcCGCgccGCAgagCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGaccCGUa--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.