miRNA display CGI


Results 81 - 100 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 18591 0.69 0.489913
Target:  5'- cGUGCGCCauuagcgcGCCGUcCGC--GGCGUCGGc -3'
miRNA:   3'- -CGCGCGG--------UGGCGaGCGacCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 18703 0.67 0.634661
Target:  5'- cCGCGUCACCGCcagCGCcgcggGGaGCGccagCGGg -3'
miRNA:   3'- cGCGCGGUGGCGa--GCGa----CC-CGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 18755 0.71 0.394111
Target:  5'- -aGCGCCGCCGC-CGCggcuaaGGCggCGGc -3'
miRNA:   3'- cgCGCGGUGGCGaGCGac----CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 18810 0.81 0.0905
Target:  5'- cGCGCGCCAgCGCgCGCaUGGGCA-CGGc -3'
miRNA:   3'- -CGCGCGGUgGCGaGCG-ACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 18944 0.71 0.386016
Target:  5'- -aGCGCCGCCGCggCGUccGGGCggCGa -3'
miRNA:   3'- cgCGCGGUGGCGa-GCGa-CCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 19445 0.71 0.401489
Target:  5'- cGCGCGCCcgcugccgggccaGCCGCUcCGCcgcgcgcuccaUGGGUgcccaagaacGUCGGg -3'
miRNA:   3'- -CGCGCGG-------------UGGCGA-GCG-----------ACCCG----------UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 19644 0.78 0.146129
Target:  5'- gGCGCGCgGCCGCUUGC-GGGCc-CGGc -3'
miRNA:   3'- -CGCGCGgUGGCGAGCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 20038 0.73 0.278271
Target:  5'- uGCG-GCCGCCGC-C-CUGGGCG-CGGg -3'
miRNA:   3'- -CGCgCGGUGGCGaGcGACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 20186 0.71 0.360095
Target:  5'- gGCGCGCCgguaugcgaauaccACCGcCUCGUUGGGaucuUUGGc -3'
miRNA:   3'- -CGCGCGG--------------UGGC-GAGCGACCCgu--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 20991 0.75 0.231322
Target:  5'- cGCGCGCCGCUGCaUGCUGGuGCGaacUCa- -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGACC-CGU---AGcc -5'
6372 5' -61.3 NC_001847.1 + 21357 0.69 0.49917
Target:  5'- uGCGCGCCGuCgGCg-GCUcGGGCcgccUCGGg -3'
miRNA:   3'- -CGCGCGGU-GgCGagCGA-CCCGu---AGCC- -5'
6372 5' -61.3 NC_001847.1 + 21742 0.67 0.634661
Target:  5'- -gGCGCCGgcCCGCgcgCGCggggGGGCcgcCGGc -3'
miRNA:   3'- cgCGCGGU--GGCGa--GCGa---CCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 21951 0.71 0.378032
Target:  5'- aGCuCGUCGuCCGggCGCUGGGCcgCGGc -3'
miRNA:   3'- -CGcGCGGU-GGCgaGCGACCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 22181 0.71 0.37016
Target:  5'- uCGCGCCGCgaaugCGCgggCGCUGGGCcgUGc -3'
miRNA:   3'- cGCGCGGUG-----GCGa--GCGACCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 24335 0.69 0.508504
Target:  5'- gGCGCGCCacGCCGCgCGC--GGCcuuuUCGGu -3'
miRNA:   3'- -CGCGCGG--UGGCGaGCGacCCGu---AGCC- -5'
6372 5' -61.3 NC_001847.1 + 24479 0.68 0.524538
Target:  5'- aGCGCGgCAgguugaCGCUggccaaguugcacaCGCcgUGGGCGUCGGg -3'
miRNA:   3'- -CGCGCgGUg-----GCGA--------------GCG--ACCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 26178 0.72 0.321066
Target:  5'- cCGCGCCuccCUGCUCGCucaccgccgggguccUGGGCGggaagCGGg -3'
miRNA:   3'- cGCGCGGu--GGCGAGCG---------------ACCCGUa----GCC- -5'
6372 5' -61.3 NC_001847.1 + 26459 0.67 0.634661
Target:  5'- cCGCGCgGCUGUUCGCcagcgcgGGGag-CGGa -3'
miRNA:   3'- cGCGCGgUGGCGAGCGa------CCCguaGCC- -5'
6372 5' -61.3 NC_001847.1 + 26506 0.69 0.517911
Target:  5'- gGCGgGCCuGCCGggCGCggggccggGGGCGuUCGGc -3'
miRNA:   3'- -CGCgCGG-UGGCgaGCGa-------CCCGU-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 26879 0.69 0.517911
Target:  5'- cGCGgcCGCCACCGC-CGUcGGGCAa--- -3'
miRNA:   3'- -CGC--GCGGUGGCGaGCGaCCCGUagcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.