miRNA display CGI


Results 101 - 120 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 27076 0.7 0.419042
Target:  5'- cGgGCGgCACCGCgcccaCGCUGGagGCGUCGc -3'
miRNA:   3'- -CgCGCgGUGGCGa----GCGACC--CGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 27327 0.72 0.354754
Target:  5'- cGCGcCGCCGCCGCcgCGCUuuGCcgCGGc -3'
miRNA:   3'- -CGC-GCGGUGGCGa-GCGAccCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 27510 0.67 0.614916
Target:  5'- uCG-GCCGCCGC-CGCgGcGGCggCGGg -3'
miRNA:   3'- cGCgCGGUGGCGaGCGaC-CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 27618 0.66 0.662277
Target:  5'- gGCGCgGCCAUCGUUCcucguccGCUcGGCAcucgcgcUCGGg -3'
miRNA:   3'- -CGCG-CGGUGGCGAG-------CGAcCCGU-------AGCC- -5'
6372 5' -61.3 NC_001847.1 + 27699 0.69 0.489913
Target:  5'- -aGCGCCGgCGCaCGCggcggGGGCAagGGc -3'
miRNA:   3'- cgCGCGGUgGCGaGCGa----CCCGUagCC- -5'
6372 5' -61.3 NC_001847.1 + 27899 0.68 0.527387
Target:  5'- aGUGCGCCgagGCCGagggggCGgaGGGCG-CGGa -3'
miRNA:   3'- -CGCGCGG---UGGCga----GCgaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 27956 0.67 0.634661
Target:  5'- gGCGCGCgCGCuCGCggUCGCggugGaGGCGgccgCGGc -3'
miRNA:   3'- -CGCGCG-GUG-GCG--AGCGa---C-CCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 27982 0.66 0.654397
Target:  5'- uCGUGgCGCCGC--GCUGGGCcgCGc -3'
miRNA:   3'- cGCGCgGUGGCGagCGACCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 28204 0.68 0.527387
Target:  5'- uGCGCGCCACgGCggCGUUcGGCc-CGGu -3'
miRNA:   3'- -CGCGCGGUGgCGa-GCGAcCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 28328 0.7 0.444908
Target:  5'- uGCGUGCCGCuCGC-CgGC-GGGCAgcgCGGc -3'
miRNA:   3'- -CGCGCGGUG-GCGaG-CGaCCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 28420 0.67 0.634661
Target:  5'- gGCGCGCaACCgGCgcccgCGCUGGcuacGCcgCGGc -3'
miRNA:   3'- -CGCGCGgUGG-CGa----GCGACC----CGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 28459 0.66 0.693611
Target:  5'- cGCGCgacggGCCGCCGC-CGCUGGa----GGg -3'
miRNA:   3'- -CGCG-----CGGUGGCGaGCGACCcguagCC- -5'
6372 5' -61.3 NC_001847.1 + 28496 0.66 0.677989
Target:  5'- cGCgGCGCCGCCGCUagCGCgcgcgcuuuuugccgUGGcGCuuGUCGa -3'
miRNA:   3'- -CG-CGCGGUGGCGA--GCG---------------ACC-CG--UAGCc -5'
6372 5' -61.3 NC_001847.1 + 28524 0.75 0.215515
Target:  5'- aGCGCGCCGCCGC-CGCccGGCcgCGu -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGacCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 28577 0.67 0.624786
Target:  5'- -gGCGCCGggGCUgGCUGaGGCGUuugCGGa -3'
miRNA:   3'- cgCGCGGUggCGAgCGAC-CCGUA---GCC- -5'
6372 5' -61.3 NC_001847.1 + 28610 0.69 0.49917
Target:  5'- gGCG-GCCGCgCGCUaCGCgGcGGCcgCGGg -3'
miRNA:   3'- -CGCgCGGUG-GCGA-GCGaC-CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 28723 0.66 0.683859
Target:  5'- uGCGCGgCGCgGC-CGC-GGGCAgcgUCGc -3'
miRNA:   3'- -CGCGCgGUGgCGaGCGaCCCGU---AGCc -5'
6372 5' -61.3 NC_001847.1 + 28775 0.69 0.49917
Target:  5'- gGCGCGCCuGCUGCagcggCGCgugcaGGGCugcCGGg -3'
miRNA:   3'- -CGCGCGG-UGGCGa----GCGa----CCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 28850 0.66 0.664245
Target:  5'- aCGCGCgGCCGCgcgCGCgacgccgGcGGCGcUGGg -3'
miRNA:   3'- cGCGCGgUGGCGa--GCGa------C-CCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 29042 0.68 0.575624
Target:  5'- cGCGCGCCggcagacguGCUGCaggCGgUGGGCugcguggCGGu -3'
miRNA:   3'- -CGCGCGG---------UGGCGa--GCgACCCGua-----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.