miRNA display CGI


Results 121 - 140 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 29188 0.71 0.402314
Target:  5'- cCGCGCCGCCgGCgcCGCcGGGCuccCGGu -3'
miRNA:   3'- cGCGCGGUGG-CGa-GCGaCCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 29258 0.66 0.674068
Target:  5'- uGCGCGCCggACgCGCUgGC-GGcGCAccCGGa -3'
miRNA:   3'- -CGCGCGG--UG-GCGAgCGaCC-CGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 29376 0.71 0.391671
Target:  5'- uGCGCGCCgaggcgGCCGCcgCGCUGgaggcggccgcgcuGGCGgcgCGGa -3'
miRNA:   3'- -CGCGCGG------UGGCGa-GCGAC--------------CCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 29427 0.71 0.394111
Target:  5'- uGCGCGCCAgCGagCGCUgGGGCGU-GGc -3'
miRNA:   3'- -CGCGCGGUgGCgaGCGA-CCCGUAgCC- -5'
6372 5' -61.3 NC_001847.1 + 29579 0.68 0.575624
Target:  5'- -gGCGCCggcGCCGCcgCGCcGGGC--CGGg -3'
miRNA:   3'- cgCGCGG---UGGCGa-GCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 29899 0.67 0.634661
Target:  5'- gGCGgcccUGCCgGCCGC-CGCgggGGGCcccUCGGg -3'
miRNA:   3'- -CGC----GCGG-UGGCGaGCGa--CCCGu--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 29967 0.67 0.624786
Target:  5'- aGC-CGCCGCCGCcgaCGCggccGGGCcggcgCGGc -3'
miRNA:   3'- -CGcGCGGUGGCGa--GCGa---CCCGua---GCC- -5'
6372 5' -61.3 NC_001847.1 + 30212 0.71 0.37016
Target:  5'- cGCGCGCCgaaGCCGCgcgCGCccGGGCcgaGGu -3'
miRNA:   3'- -CGCGCGG---UGGCGa--GCGa-CCCGuagCC- -5'
6372 5' -61.3 NC_001847.1 + 30237 0.68 0.536927
Target:  5'- gGCcCGCCGCCGCgcgggcccCGCgGGGCGcUCGc -3'
miRNA:   3'- -CGcGCGGUGGCGa-------GCGaCCCGU-AGCc -5'
6372 5' -61.3 NC_001847.1 + 30408 0.71 0.3624
Target:  5'- gGCGCugGCCGCCggcaaGCUCGUggcGGGCG-CGGa -3'
miRNA:   3'- -CGCG--CGGUGG-----CGAGCGa--CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 30418 0.7 0.451071
Target:  5'- cCGCGCCGCggcgggcucucgcaCGCgcucgcggCGCUGGGCAacCGGc -3'
miRNA:   3'- cGCGCGGUG--------------GCGa-------GCGACCCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 30462 0.66 0.654397
Target:  5'- gGUGgGCCGCUuucuGCagCGCUGGGacgcgAUCGGc -3'
miRNA:   3'- -CGCgCGGUGG----CGa-GCGACCCg----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 30733 0.68 0.53597
Target:  5'- aGUGCGCCGCgCGCUggcccgagcggcgCGCUGGcGCG-CGc -3'
miRNA:   3'- -CGCGCGGUG-GCGA-------------GCGACC-CGUaGCc -5'
6372 5' -61.3 NC_001847.1 + 30773 0.67 0.605059
Target:  5'- uGCaGCGCCGCgCGUcUGC-GGGCG-CGGa -3'
miRNA:   3'- -CG-CGCGGUG-GCGaGCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 30852 0.67 0.634661
Target:  5'- -gGCGCCGCCGCUgCGgCUcuGCcgCGGc -3'
miRNA:   3'- cgCGCGGUGGCGA-GC-GAccCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 30957 0.66 0.644534
Target:  5'- cGCGUGCUGCCGg-CGCUcgacGGGCGcaaGGa -3'
miRNA:   3'- -CGCGCGGUGGCgaGCGA----CCCGUag-CC- -5'
6372 5' -61.3 NC_001847.1 + 30994 0.67 0.634661
Target:  5'- cCGCGCagGgCGCggCGCUGGGgcUCGGg -3'
miRNA:   3'- cGCGCGg-UgGCGa-GCGACCCguAGCC- -5'
6372 5' -61.3 NC_001847.1 + 31058 0.72 0.332506
Target:  5'- cCGCGCCGCCaacCGCUGGGgGcUCGGc -3'
miRNA:   3'- cGCGCGGUGGcgaGCGACCCgU-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 31083 0.68 0.536927
Target:  5'- nGCGCGCCGCUGCggcCGgUGuaccuGGCcugCGGg -3'
miRNA:   3'- -CGCGCGGUGGCGa--GCgAC-----CCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 31165 0.67 0.605059
Target:  5'- gGCgGCGUCGaCGCcgCGCUGGGCGcCGa -3'
miRNA:   3'- -CG-CGCGGUgGCGa-GCGACCCGUaGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.