miRNA display CGI


Results 21 - 40 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 132189 0.71 0.391671
Target:  5'- uGCGCGCCgaggcgGCCGCcgCGCUGgaggcggccgcgcuGGCGgcgCGGa -3'
miRNA:   3'- -CGCGCGG------UGGCGa-GCGAC--------------CCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 132098 0.68 0.556178
Target:  5'- cUGCGCCugCgGCU-GCUGGGCG-CGc -3'
miRNA:   3'- cGCGCGGugG-CGAgCGACCCGUaGCc -5'
6372 5' -61.3 NC_001847.1 + 132071 0.66 0.674068
Target:  5'- uGCGCGCCggACgCGCUgGC-GGcGCAccCGGa -3'
miRNA:   3'- -CGCGCGG--UG-GCGAgCGaCC-CGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 132037 0.66 0.653412
Target:  5'- -gGCGCUcuaccugGCCGCuaUCGUgggGGGCGUCa- -3'
miRNA:   3'- cgCGCGG-------UGGCG--AGCGa--CCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 132001 0.71 0.402314
Target:  5'- cCGCGCCGCCgGCgcCGCcGGGCuccCGGu -3'
miRNA:   3'- cGCGCGGUGG-CGa-GCGaCCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 131991 0.67 0.592273
Target:  5'- uGUGCGUuaacugcugcuccaCGCUGCUCGCgGGGCugcUCGu -3'
miRNA:   3'- -CGCGCG--------------GUGGCGAGCGaCCCGu--AGCc -5'
6372 5' -61.3 NC_001847.1 + 131827 0.66 0.65144
Target:  5'- cUGCGCgGCCGCcuaccCGCuguaccugaaaaucUGGGCGUgGGu -3'
miRNA:   3'- cGCGCGgUGGCGa----GCG--------------ACCCGUAgCC- -5'
6372 5' -61.3 NC_001847.1 + 131602 0.67 0.634661
Target:  5'- --aCGCCGCCGCcgCGCUcGcGGCcguaGUCGGc -3'
miRNA:   3'- cgcGCGGUGGCGa-GCGA-C-CCG----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 131588 0.69 0.49917
Target:  5'- gGCGCGCCuGCUGCagcggCGCgugcaGGGCugcCGGg -3'
miRNA:   3'- -CGCGCGG-UGGCGa----GCGa----CCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 131423 0.69 0.49917
Target:  5'- gGCG-GCCGCgCGCUaCGCgGcGGCcgCGGg -3'
miRNA:   3'- -CGCgCGGUG-GCGA-GCGaC-CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 131337 0.75 0.215515
Target:  5'- aGCGCGCCGCCGC-CGCccGGCcgCGu -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGacCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 131272 0.66 0.693611
Target:  5'- cGCGCgacggGCCGCCGC-CGCUGGa----GGg -3'
miRNA:   3'- -CGCG-----CGGUGGCGaGCGACCcguagCC- -5'
6372 5' -61.3 NC_001847.1 + 131246 0.69 0.471644
Target:  5'- cCGCGCCACCGCgCGCaacGGC-UCGc -3'
miRNA:   3'- cGCGCGGUGGCGaGCGac-CCGuAGCc -5'
6372 5' -61.3 NC_001847.1 + 131233 0.67 0.634661
Target:  5'- gGCGCGCaACCgGCgcccgCGCUGGcuacGCcgCGGc -3'
miRNA:   3'- -CGCGCGgUGG-CGa----GCGACC----CGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 130971 0.69 0.47074
Target:  5'- gGCGCGCgGCCcaaaacaaggcccGCUCGCUGGugucccucaGUGUCGa -3'
miRNA:   3'- -CGCGCGgUGG-------------CGAGCGACC---------CGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 130923 0.68 0.527387
Target:  5'- cGCGCGCCggcACCGC--GCaGGGCuUUGGc -3'
miRNA:   3'- -CGCGCGG---UGGCGagCGaCCCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 130769 0.67 0.634661
Target:  5'- gGCGCGCgCGCuCGCggUCGCggugGaGGCGgccgCGGc -3'
miRNA:   3'- -CGCGCG-GUG-GCG--AGCGa---C-CCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 130731 0.74 0.248096
Target:  5'- cGCGCGCUGCCGC-CGUc-GGCGUCGa -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGacCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 130140 0.72 0.354754
Target:  5'- cGCGcCGCCGCCGCcgCGCUuuGCcgCGGc -3'
miRNA:   3'- -CGC-GCGGUGGCGa-GCGAccCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 130072 0.68 0.56588
Target:  5'- aCGCGUCGCCG-UC-CUGGGCcgCGc -3'
miRNA:   3'- cGCGCGGUGGCgAGcGACCCGuaGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.