miRNA display CGI


Results 61 - 80 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 123109 0.67 0.605059
Target:  5'- aGgGCGuCCAgCGCUcCGCcGGGCAgaGGg -3'
miRNA:   3'- -CgCGC-GGUgGCGA-GCGaCCCGUagCC- -5'
6372 5' -61.3 NC_001847.1 + 123061 0.66 0.693611
Target:  5'- cGgGCGCCGgacCCGCggCGCUccGcGGCcUCGGc -3'
miRNA:   3'- -CgCGCGGU---GGCGa-GCGA--C-CCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 122875 0.68 0.56588
Target:  5'- gGCGCGCUuggACuCGCgggacUGgUGGGCAUCGc -3'
miRNA:   3'- -CGCGCGG---UG-GCGa----GCgACCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 122379 0.66 0.683859
Target:  5'- aGCGCGUccagcgacauCugCGCgaagaaggCGCUGGGCcgCa- -3'
miRNA:   3'- -CGCGCG----------GugGCGa-------GCGACCCGuaGcc -5'
6372 5' -61.3 NC_001847.1 + 122341 0.82 0.071793
Target:  5'- cGCGCGCCACgCGCugaUCGUUGGGCGgcgugCGGc -3'
miRNA:   3'- -CGCGCGGUG-GCG---AGCGACCCGUa----GCC- -5'
6372 5' -61.3 NC_001847.1 + 122198 0.67 0.59522
Target:  5'- cGCGCGCCGCCacaCUaGCcgGGGC--CGGg -3'
miRNA:   3'- -CGCGCGGUGGc--GAgCGa-CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 122023 0.66 0.654397
Target:  5'- gGCGCGgCGCCGCccgCGCgccccGGCcgCGa -3'
miRNA:   3'- -CGCGCgGUGGCGa--GCGac---CCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 121765 0.72 0.354754
Target:  5'- gGCGCGCCcggacgugcgcGCCGUUCGCggcUGGaGCGUCc- -3'
miRNA:   3'- -CGCGCGG-----------UGGCGAGCG---ACC-CGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 121650 0.66 0.681904
Target:  5'- gGCGCGCacuucgcggaagGCCGC-CGCUGuGGgGUgCGGc -3'
miRNA:   3'- -CGCGCGg-----------UGGCGaGCGAC-CCgUA-GCC- -5'
6372 5' -61.3 NC_001847.1 + 121240 0.66 0.644534
Target:  5'- aGCGCcccaGCCACCG-UCGUggcacUGGGCuccCGGc -3'
miRNA:   3'- -CGCG----CGGUGGCgAGCG-----ACCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 121127 0.69 0.471644
Target:  5'- cGCuGCGCCGCCGCcUGCUGccguGCucUCGGc -3'
miRNA:   3'- -CG-CGCGGUGGCGaGCGACc---CGu-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 121008 0.67 0.609986
Target:  5'- uGCGCaGCCGgccggagacacgcCCGCUCGCUuccggcgccaacuGGCGUCGa -3'
miRNA:   3'- -CGCG-CGGU-------------GGCGAGCGAc------------CCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 120699 0.67 0.624786
Target:  5'- aGCaGCGCgGCCGCgCGCUcGGCGccaaacagCGGa -3'
miRNA:   3'- -CG-CGCGgUGGCGaGCGAcCCGUa-------GCC- -5'
6372 5' -61.3 NC_001847.1 + 120579 0.72 0.332506
Target:  5'- cGCGCGcCCGCCaGCacccgCGCUGcGGCG-CGGu -3'
miRNA:   3'- -CGCGC-GGUGG-CGa----GCGAC-CCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 120491 0.67 0.59522
Target:  5'- aCGCGCC-CCGCUCGCagcgaGcGGCGcgCGa -3'
miRNA:   3'- cGCGCGGuGGCGAGCGa----C-CCGUa-GCc -5'
6372 5' -61.3 NC_001847.1 + 120103 0.66 0.693611
Target:  5'- -gGCGCuCGCacaGCUCGCccgGcGGCcgCGGc -3'
miRNA:   3'- cgCGCG-GUGg--CGAGCGa--C-CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 119558 0.68 0.527387
Target:  5'- gGCGCGCgGCCaGaCUCuGC-GGGCAgCGGc -3'
miRNA:   3'- -CGCGCGgUGG-C-GAG-CGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 119529 0.7 0.444908
Target:  5'- gGCGgcCGCgGCCgGCagGCUGGGCAagGGg -3'
miRNA:   3'- -CGC--GCGgUGG-CGagCGACCCGUagCC- -5'
6372 5' -61.3 NC_001847.1 + 119214 0.72 0.339807
Target:  5'- -gGCGCCGCgGCcacCGCgGGGCggCGGg -3'
miRNA:   3'- cgCGCGGUGgCGa--GCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 119154 0.76 0.195887
Target:  5'- gGCGcCGCgGCCGC-CGCgGGGCggCGGg -3'
miRNA:   3'- -CGC-GCGgUGGCGaGCGaCCCGuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.