miRNA display CGI


Results 81 - 100 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 119094 0.76 0.195887
Target:  5'- gGCGcCGCgGCCGC-CGCgGGGCggCGGg -3'
miRNA:   3'- -CGC-GCGgUGGCGaGCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 118749 0.66 0.644534
Target:  5'- aGCGCuGCCACaCGCgcgGUUGuGGCGcgCGGu -3'
miRNA:   3'- -CGCG-CGGUG-GCGag-CGAC-CCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 118325 0.66 0.654397
Target:  5'- cCGCGCCACCGaucCGgaguUUGGGCucuUUGGc -3'
miRNA:   3'- cGCGCGGUGGCga-GC----GACCCGu--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 117868 0.69 0.49917
Target:  5'- aCGaCGCCACCGg-CGaCUGGGCcugCGGc -3'
miRNA:   3'- cGC-GCGGUGGCgaGC-GACCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 117025 0.72 0.318252
Target:  5'- cGCGCGCCccaccGCCGCggagcUGCUGGaGCAccccgucuUCGGu -3'
miRNA:   3'- -CGCGCGG-----UGGCGa----GCGACC-CGU--------AGCC- -5'
6372 5' -61.3 NC_001847.1 + 116964 0.67 0.634661
Target:  5'- cGCGCGuCCGCCauggGCcCGCUgGGGCGagcgUGGc -3'
miRNA:   3'- -CGCGC-GGUGG----CGaGCGA-CCCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 116698 0.69 0.480736
Target:  5'- gGCGCGgCACCGCacgGCU-GGCcgCGGc -3'
miRNA:   3'- -CGCGCgGUGGCGag-CGAcCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 116663 0.69 0.484397
Target:  5'- cGCGCGCUacgacuGCCGCacggacguguggagCGC-GGGCGUCGu -3'
miRNA:   3'- -CGCGCGG------UGGCGa-------------GCGaCCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 116628 0.66 0.654397
Target:  5'- gGCGCGCCcgcAgCGCUgGCcucGGCAgccgCGGg -3'
miRNA:   3'- -CGCGCGG---UgGCGAgCGac-CCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 116597 0.68 0.527387
Target:  5'- cGCaGCGCUGCCGCUCuGC--GGCG-CGGa -3'
miRNA:   3'- -CG-CGCGGUGGCGAG-CGacCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 116539 0.73 0.282722
Target:  5'- cGCGCGCCgacGCCGCggacggCGCgcuaauggcgcacgUGGGCAUCu- -3'
miRNA:   3'- -CGCGCGG---UGGCGa-----GCG--------------ACCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 116427 0.66 0.674068
Target:  5'- cGCGCGCUuggGCUCGa-GGGCggUGGg -3'
miRNA:   3'- -CGCGCGGuggCGAGCgaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 116353 0.76 0.18622
Target:  5'- cGCGCGCCGCCGC-CGC-GGaGCucgcgcuGUCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGaCC-CG-------UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 116173 0.72 0.339807
Target:  5'- cGgGCGCCGCgGCcgCGCUGGuCGUCGc -3'
miRNA:   3'- -CgCGCGGUGgCGa-GCGACCcGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 115882 0.67 0.59522
Target:  5'- cGCuGCGCCGCCgGCUCGCgccGC-UUGGc -3'
miRNA:   3'- -CG-CGCGGUGG-CGAGCGaccCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 115814 0.67 0.624786
Target:  5'- cGCGCGCUgcGCUGCg-GC-GGGCucugCGGa -3'
miRNA:   3'- -CGCGCGG--UGGCGagCGaCCCGua--GCC- -5'
6372 5' -61.3 NC_001847.1 + 115575 0.71 0.3624
Target:  5'- aCGgGCCGCgGCgaUCGC-GGGCGUCGa -3'
miRNA:   3'- cGCgCGGUGgCG--AGCGaCCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 115517 0.68 0.546526
Target:  5'- cGCGCGCCGaCGCcggCGCcccGGGCccgagcUCGGg -3'
miRNA:   3'- -CGCGCGGUgGCGa--GCGa--CCCGu-----AGCC- -5'
6372 5' -61.3 NC_001847.1 + 114163 0.67 0.59522
Target:  5'- uGCaGCGgCGCgCGCUCaCUGGGCGcUCGc -3'
miRNA:   3'- -CG-CGCgGUG-GCGAGcGACCCGU-AGCc -5'
6372 5' -61.3 NC_001847.1 + 113969 0.67 0.614916
Target:  5'- gGCGCGUCGCCGCagaagCGCUccaGGaGCGUa-- -3'
miRNA:   3'- -CGCGCGGUGGCGa----GCGA---CC-CGUAgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.