miRNA display CGI


Results 101 - 120 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 113061 0.66 0.674068
Target:  5'- aGCGCGUCGgCGCaCGuCUGcGCaAUCGGa -3'
miRNA:   3'- -CGCGCGGUgGCGaGC-GACcCG-UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 113022 0.71 0.394111
Target:  5'- aGCaCGCCGCCGCgCGuCUGGGaCGcCGGc -3'
miRNA:   3'- -CGcGCGGUGGCGaGC-GACCC-GUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 113007 0.78 0.139049
Target:  5'- uGCGCGCCGCCGCcgcCGCcGGGCccaGGg -3'
miRNA:   3'- -CGCGCGGUGGCGa--GCGaCCCGuagCC- -5'
6372 5' -61.3 NC_001847.1 + 112880 0.68 0.56588
Target:  5'- cGCGCGCUgcGCCGCgCGCU---CGUCGGc -3'
miRNA:   3'- -CGCGCGG--UGGCGaGCGAcccGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 112534 0.66 0.654397
Target:  5'- uGCGCgGCCACuCGCUUGCcacgcgaccGGGCGggcccugcccCGGg -3'
miRNA:   3'- -CGCG-CGGUG-GCGAGCGa--------CCCGUa---------GCC- -5'
6372 5' -61.3 NC_001847.1 + 111350 0.67 0.585407
Target:  5'- gGUG-GCCGCCGC--GCUGGGCGaccUCGc -3'
miRNA:   3'- -CGCgCGGUGGCGagCGACCCGU---AGCc -5'
6372 5' -61.3 NC_001847.1 + 110825 1.1 0.000756
Target:  5'- gGCGCGCCACCGCUCGCUGGGCAUCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGAGCGACCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 110755 0.68 0.566852
Target:  5'- cGCGCGCCGCgccggaGUUCGCgcaugcggguuuuuaGGGCccugcUCGGg -3'
miRNA:   3'- -CGCGCGGUGg-----CGAGCGa--------------CCCGu----AGCC- -5'
6372 5' -61.3 NC_001847.1 + 110248 0.68 0.56588
Target:  5'- aUGCGCgGCCuGCUCGCccGGGacgaGUCGa -3'
miRNA:   3'- cGCGCGgUGG-CGAGCGa-CCCg---UAGCc -5'
6372 5' -61.3 NC_001847.1 + 109970 0.71 0.394111
Target:  5'- gGCGUGUCGCgcuCGCUCGCccGGGCGguucauccgcuUCGGc -3'
miRNA:   3'- -CGCGCGGUG---GCGAGCGa-CCCGU-----------AGCC- -5'
6372 5' -61.3 NC_001847.1 + 109171 0.67 0.605059
Target:  5'- cCG-GCCGCgCGCUUGUUcccaaGGCGUCGGg -3'
miRNA:   3'- cGCgCGGUG-GCGAGCGAc----CCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 108742 0.7 0.410626
Target:  5'- uGCGaCGCgACgGCguuccugccgCGCUGGGCGcCGGa -3'
miRNA:   3'- -CGC-GCGgUGgCGa---------GCGACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 108716 0.68 0.556178
Target:  5'- cGCGCGUUggucuggcaGCCGCUagGCggaUGGGCggCGGa -3'
miRNA:   3'- -CGCGCGG---------UGGCGAg-CG---ACCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 108159 0.69 0.480736
Target:  5'- cCGCGCCGCCGCagacgCGCUGcGCG-CGc -3'
miRNA:   3'- cGCGCGGUGGCGa----GCGACcCGUaGCc -5'
6372 5' -61.3 NC_001847.1 + 108076 0.68 0.56588
Target:  5'- gGCGCGgUGCCGCcCGggGGGCugCGGg -3'
miRNA:   3'- -CGCGCgGUGGCGaGCgaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 107695 0.68 0.575624
Target:  5'- -gGCGCCugCgguuggcggcGCUCGCgggcGGGCAcccCGGg -3'
miRNA:   3'- cgCGCGGugG----------CGAGCGa---CCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 107610 0.73 0.284646
Target:  5'- cCGCGCCGCCGUUCuC-GGGCGUCc- -3'
miRNA:   3'- cGCGCGGUGGCGAGcGaCCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 107462 0.67 0.605059
Target:  5'- cGCGCGCCucagcccgacgcGCCGCgucgaGCaGGGC--CGGg -3'
miRNA:   3'- -CGCGCGG------------UGGCGag---CGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 107204 0.69 0.46264
Target:  5'- cGCGCGCCGCgGCccaggCGCUGuccGCGUCc- -3'
miRNA:   3'- -CGCGCGGUGgCGa----GCGACc--CGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 107139 0.66 0.654397
Target:  5'- aGCGCgGCaCGCCGCgCGCUGcaGCG-CGGc -3'
miRNA:   3'- -CGCG-CG-GUGGCGaGCGACc-CGUaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.