Results 41 - 60 of 652 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6372 | 5' | -61.3 | NC_001847.1 | + | 66776 | 0.73 | 0.291136 |
Target: 5'- aGCGCcgacguuuucGCCGgCGUaCGuCUGGGCGUCGGu -3' miRNA: 3'- -CGCG----------CGGUgGCGaGC-GACCCGUAGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 101369 | 0.75 | 0.236805 |
Target: 5'- cGCGCGCUugCGC-CGCggGGGCugcccgCGGc -3' miRNA: 3'- -CGCGCGGugGCGaGCGa-CCCGua----GCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 33519 | 0.8 | 0.100227 |
Target: 5'- cGgGCGCCGCCGCggaggCGCcGGGCG-CGGg -3' miRNA: 3'- -CgCGCGGUGGCGa----GCGaCCCGUaGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 82376 | 0.73 | 0.284646 |
Target: 5'- cGCGCGCCGCgugaccUGCggGCUGGuCAUCGGc -3' miRNA: 3'- -CGCGCGGUG------GCGagCGACCcGUAGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 18810 | 0.81 | 0.0905 |
Target: 5'- cGCGCGCCAgCGCgCGCaUGGGCA-CGGc -3' miRNA: 3'- -CGCGCGGUgGCGaGCG-ACCCGUaGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 121765 | 0.72 | 0.354754 |
Target: 5'- gGCGCGCCcggacgugcgcGCCGUUCGCggcUGGaGCGUCc- -3' miRNA: 3'- -CGCGCGG-----------UGGCGAGCG---ACC-CGUAGcc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 113007 | 0.78 | 0.139049 |
Target: 5'- uGCGCGCCGCCGCcgcCGCcGGGCccaGGg -3' miRNA: 3'- -CGCGCGGUGGCGa--GCGaCCCGuagCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 60321 | 0.72 | 0.347223 |
Target: 5'- cGCGCGCCACCuGCUCGC---GCGUgaGGa -3' miRNA: 3'- -CGCGCGGUGG-CGAGCGaccCGUAg-CC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 58807 | 0.72 | 0.339807 |
Target: 5'- -aGCGCCugCGCcggCGcCUGGGCcggugcgaggGUCGGc -3' miRNA: 3'- cgCGCGGugGCGa--GC-GACCCG----------UAGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 32124 | 0.72 | 0.325321 |
Target: 5'- cGCcCGCCGCCGg-CGCUGGGCGcCGc -3' miRNA: 3'- -CGcGCGGUGGCgaGCGACCCGUaGCc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 117025 | 0.72 | 0.318252 |
Target: 5'- cGCGCGCCccaccGCCGCggagcUGCUGGaGCAccccgucuUCGGu -3' miRNA: 3'- -CGCGCGG-----UGGCGa----GCGACC-CGU--------AGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 97188 | 0.73 | 0.314066 |
Target: 5'- cGCGgGCCAUggcuaccggugcgguUGCUCGCcgGGGCgcgaGUCGGg -3' miRNA: 3'- -CGCgCGGUG---------------GCGAGCGa-CCCG----UAGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 18533 | 0.73 | 0.297741 |
Target: 5'- gGCGCGCCGCCGUcCGCgccGCAgagCGGc -3' miRNA: 3'- -CGCGCGGUGGCGaGCGaccCGUa--GCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 106545 | 0.73 | 0.284646 |
Target: 5'- aGCGCGCgGCCGcCUCGCggaucucgGGGCAg--- -3' miRNA: 3'- -CGCGCGgUGGC-GAGCGa-------CCCGUagcc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 20038 | 0.73 | 0.278271 |
Target: 5'- uGCG-GCCGCCGC-C-CUGGGCG-CGGg -3' miRNA: 3'- -CGCgCGGUGGCGaGcGACCCGUaGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 5458 | 0.74 | 0.27201 |
Target: 5'- aGCGCGUCccgGCCGCUCuCUGcGGCggCGGc -3' miRNA: 3'- -CGCGCGG---UGGCGAGcGAC-CCGuaGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 105820 | 0.74 | 0.259828 |
Target: 5'- cGCGCGCucCACCGCgUCGC-GGGCcgCGc -3' miRNA: 3'- -CGCGCG--GUGGCG-AGCGaCCCGuaGCc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 131337 | 0.75 | 0.215515 |
Target: 5'- aGCGCGCCGCCGC-CGCccGGCcgCGu -3' miRNA: 3'- -CGCGCGGUGGCGaGCGacCCGuaGCc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 134018 | 0.76 | 0.186671 |
Target: 5'- -gGCGCCGCCGCUggUGCUGgaGGCcgCGGc -3' miRNA: 3'- cgCGCGGUGGCGA--GCGAC--CCGuaGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 106044 | 0.77 | 0.16938 |
Target: 5'- cGCGCGCCGCCcgcgccguGCUCGCcggcggcagGGGCGcCGGc -3' miRNA: 3'- -CGCGCGGUGG--------CGAGCGa--------CCCGUaGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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