miRNA display CGI


Results 61 - 80 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 18533 0.73 0.297741
Target:  5'- gGCGCGCCGCCGUcCGCgccGCAgagCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGaccCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 94212 0.72 0.318252
Target:  5'- uGCGCGCgGCggaGCUCGCggcgGGGCGcccgcgCGGc -3'
miRNA:   3'- -CGCGCGgUGg--CGAGCGa---CCCGUa-----GCC- -5'
6372 5' -61.3 NC_001847.1 + 19644 0.78 0.146129
Target:  5'- gGCGCGCgGCCGCUUGC-GGGCc-CGGc -3'
miRNA:   3'- -CGCGCGgUGGCGAGCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 43497 0.77 0.16938
Target:  5'- cCGCGCCGCCGUcgaUCGCuacUGGGCGgcgcgcgCGGg -3'
miRNA:   3'- cGCGCGGUGGCG---AGCG---ACCCGUa------GCC- -5'
6372 5' -61.3 NC_001847.1 + 88617 0.76 0.200642
Target:  5'- cGCGCGCCGCCGCcgccccccgagCGCUGccgcuGGCAacgcUCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGa----------GCGAC-----CCGU----AGCC- -5'
6372 5' -61.3 NC_001847.1 + 81166 0.75 0.225947
Target:  5'- gGCcCGCCgcGCCGCUCGgaGGGCucgCGGc -3'
miRNA:   3'- -CGcGCGG--UGGCGAGCgaCCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 60484 0.74 0.265863
Target:  5'- -gGCGCCGCCGCUuugugCGCgcgcGGGCcggCGGg -3'
miRNA:   3'- cgCGCGGUGGCGA-----GCGa---CCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 80462 0.74 0.27201
Target:  5'- gGCGcCGCCGCCGC-CGUcGGGCcgCGc -3'
miRNA:   3'- -CGC-GCGGUGGCGaGCGaCCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 46117 0.73 0.278271
Target:  5'- aGCGCGCaCACgGCgUCGUaGGGCAUCc- -3'
miRNA:   3'- -CGCGCG-GUGgCG-AGCGaCCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 13296 0.73 0.284646
Target:  5'- cGCGCGCUACgCGggCGCcGGGCugcaGUCGGc -3'
miRNA:   3'- -CGCGCGGUG-GCgaGCGaCCCG----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 55664 0.71 0.378032
Target:  5'- uGCGCGCCGCgcuccgGCUCGCgcaGGCGgcCGGg -3'
miRNA:   3'- -CGCGCGGUGg-----CGAGCGac-CCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 106807 0.71 0.37016
Target:  5'- gGCGCGCgGCC-C-CGCgGGGCGcCGGg -3'
miRNA:   3'- -CGCGCGgUGGcGaGCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 45818 0.72 0.325321
Target:  5'- gGCGggaGCUGCCGCccgggccacUCGCUGGGCGgcaCGGc -3'
miRNA:   3'- -CGCg--CGGUGGCG---------AGCGACCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 74401 0.72 0.332506
Target:  5'- cGCGCgGCCGCCGCgcgCGCgcGGGCcgCc- -3'
miRNA:   3'- -CGCG-CGGUGGCGa--GCGa-CCCGuaGcc -5'
6372 5' -61.3 NC_001847.1 + 60321 0.72 0.347223
Target:  5'- cGCGCGCCACCuGCUCGC---GCGUgaGGa -3'
miRNA:   3'- -CGCGCGGUGG-CGAGCGaccCGUAg-CC- -5'
6372 5' -61.3 NC_001847.1 + 121765 0.72 0.354754
Target:  5'- gGCGCGCCcggacgugcgcGCCGUUCGCggcUGGaGCGUCc- -3'
miRNA:   3'- -CGCGCGG-----------UGGCGAGCG---ACC-CGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 20186 0.71 0.360095
Target:  5'- gGCGCGCCgguaugcgaauaccACCGcCUCGUUGGGaucuUUGGc -3'
miRNA:   3'- -CGCGCGG--------------UGGC-GAGCGACCCgu--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 34392 0.71 0.3624
Target:  5'- gGCGgcCGCCGCCGCggcagacgcggCGCUggGGGCggCGGa -3'
miRNA:   3'- -CGC--GCGGUGGCGa----------GCGA--CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 115575 0.71 0.3624
Target:  5'- aCGgGCCGCgGCgaUCGC-GGGCGUCGa -3'
miRNA:   3'- cGCgCGGUGgCG--AGCGaCCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 43796 0.71 0.37016
Target:  5'- cGCGCGCCggcgcGCCGgUCGa-GGGCGaCGGc -3'
miRNA:   3'- -CGCGCGG-----UGGCgAGCgaCCCGUaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.