miRNA display CGI


Results 81 - 100 of 652 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 10852 0.72 0.332506
Target:  5'- gGCGCGUgGCCGaggCGCggcGGGCG-CGGg -3'
miRNA:   3'- -CGCGCGgUGGCga-GCGa--CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 35561 0.72 0.339807
Target:  5'- gGCGCGCgACCGCgaCGa-GGGCGcCGGg -3'
miRNA:   3'- -CGCGCGgUGGCGa-GCgaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 85985 0.72 0.347223
Target:  5'- gGCGCGUgACCGUgguccgCGCgccgaUGGGC-UCGGg -3'
miRNA:   3'- -CGCGCGgUGGCGa-----GCG-----ACCCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 53567 0.72 0.354754
Target:  5'- cCGCGCuCGCCGC--GCUGGGCGacgUGGa -3'
miRNA:   3'- cGCGCG-GUGGCGagCGACCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 30408 0.71 0.3624
Target:  5'- gGCGCugGCCGCCggcaaGCUCGUggcGGGCG-CGGa -3'
miRNA:   3'- -CGCG--CGGUGG-----CGAGCGa--CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 115575 0.71 0.3624
Target:  5'- aCGgGCCGCgGCgaUCGC-GGGCGUCGa -3'
miRNA:   3'- cGCgCGGUGgCG--AGCGaCCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 43796 0.71 0.37016
Target:  5'- cGCGCGCCggcgcGCCGgUCGa-GGGCGaCGGc -3'
miRNA:   3'- -CGCGCGG-----UGGCgAGCgaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 13296 0.73 0.284646
Target:  5'- cGCGCGCUACgCGggCGCcGGGCugcaGUCGGc -3'
miRNA:   3'- -CGCGCGGUG-GCgaGCGaCCCG----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 46117 0.73 0.278271
Target:  5'- aGCGCGCaCACgGCgUCGUaGGGCAUCc- -3'
miRNA:   3'- -CGCGCG-GUGgCG-AGCGaCCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 80462 0.74 0.27201
Target:  5'- gGCGcCGCCGCCGC-CGUcGGGCcgCGc -3'
miRNA:   3'- -CGC-GCGGUGGCGaGCGaCCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 132189 0.71 0.391671
Target:  5'- uGCGCGCCgaggcgGCCGCcgCGCUGgaggcggccgcgcuGGCGgcgCGGa -3'
miRNA:   3'- -CGCGCGG------UGGCGa-GCGAC--------------CCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 43587 0.71 0.394111
Target:  5'- cGCGCGCC-CCaGCguggCGCUGGGgc-CGGu -3'
miRNA:   3'- -CGCGCGGuGG-CGa---GCGACCCguaGCC- -5'
6372 5' -61.3 NC_001847.1 + 34775 0.71 0.402314
Target:  5'- uGCGCGCCGCgGC-CGC-GGcGCG-CGGc -3'
miRNA:   3'- -CGCGCGGUGgCGaGCGaCC-CGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 63278 0.71 0.402314
Target:  5'- cGCGCGCUcgcgGCCGCUuccacCGCUGGGgAgggCGu -3'
miRNA:   3'- -CGCGCGG----UGGCGA-----GCGACCCgUa--GCc -5'
6372 5' -61.3 NC_001847.1 + 4314 0.7 0.410626
Target:  5'- cGCGCGCCGCCuGCggguagUGCUccgccauguaGGGCGccagcUCGGc -3'
miRNA:   3'- -CGCGCGGUGG-CGa-----GCGA----------CCCGU-----AGCC- -5'
6372 5' -61.3 NC_001847.1 + 19644 0.78 0.146129
Target:  5'- gGCGCGCgGCCGCUUGC-GGGCc-CGGc -3'
miRNA:   3'- -CGCGCGgUGGCGAGCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 43497 0.77 0.16938
Target:  5'- cCGCGCCGCCGUcgaUCGCuacUGGGCGgcgcgcgCGGg -3'
miRNA:   3'- cGCGCGGUGGCG---AGCG---ACCCGUa------GCC- -5'
6372 5' -61.3 NC_001847.1 + 88617 0.76 0.200642
Target:  5'- cGCGCGCCGCCGCcgccccccgagCGCUGccgcuGGCAacgcUCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGa----------GCGAC-----CCGU----AGCC- -5'
6372 5' -61.3 NC_001847.1 + 81166 0.75 0.225947
Target:  5'- gGCcCGCCgcGCCGCUCGgaGGGCucgCGGc -3'
miRNA:   3'- -CGcGCGG--UGGCGAGCgaCCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 60484 0.74 0.265863
Target:  5'- -gGCGCCGCCGCUuugugCGCgcgcGGGCcggCGGg -3'
miRNA:   3'- cgCGCGGUGGCGA-----GCGa---CCCGua-GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.