miRNA display CGI


Results 101 - 120 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 50767 0.71 0.402314
Target:  5'- gGCGCGCCAaCGCggagccCGCUcGGCGucuUCGGg -3'
miRNA:   3'- -CGCGCGGUgGCGa-----GCGAcCCGU---AGCC- -5'
6372 5' -61.3 NC_001847.1 + 102935 0.7 0.410626
Target:  5'- cGCGCcccgGCC-CCGCcCGC-GGGCcUCGGg -3'
miRNA:   3'- -CGCG----CGGuGGCGaGCGaCCCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 27076 0.7 0.419042
Target:  5'- cGgGCGgCACCGCgcccaCGCUGGagGCGUCGc -3'
miRNA:   3'- -CgCGCgGUGGCGa----GCGACC--CGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 106602 0.7 0.427563
Target:  5'- cCGCGCCGCCGaagCGCacgcggccGGGCggCGGc -3'
miRNA:   3'- cGCGCGGUGGCga-GCGa-------CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 79241 0.7 0.436186
Target:  5'- gGCGCGCUccccgaGCUGCUaGCc-GGCGUCGGg -3'
miRNA:   3'- -CGCGCGG------UGGCGAgCGacCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 53567 0.72 0.354754
Target:  5'- cCGCGCuCGCCGC--GCUGGGCGacgUGGa -3'
miRNA:   3'- cGCGCG-GUGGCGagCGACCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 85985 0.72 0.347223
Target:  5'- gGCGCGUgACCGUgguccgCGCgccgaUGGGC-UCGGg -3'
miRNA:   3'- -CGCGCGgUGGCGa-----GCG-----ACCCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 19644 0.78 0.146129
Target:  5'- gGCGCGCgGCCGCUUGC-GGGCc-CGGc -3'
miRNA:   3'- -CGCGCGgUGGCGAGCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 43497 0.77 0.16938
Target:  5'- cCGCGCCGCCGUcgaUCGCuacUGGGCGgcgcgcgCGGg -3'
miRNA:   3'- cGCGCGGUGGCG---AGCG---ACCCGUa------GCC- -5'
6372 5' -61.3 NC_001847.1 + 88617 0.76 0.200642
Target:  5'- cGCGCGCCGCCGCcgccccccgagCGCUGccgcuGGCAacgcUCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGa----------GCGAC-----CCGU----AGCC- -5'
6372 5' -61.3 NC_001847.1 + 81166 0.75 0.225947
Target:  5'- gGCcCGCCgcGCCGCUCGgaGGGCucgCGGc -3'
miRNA:   3'- -CGcGCGG--UGGCGAGCgaCCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 60484 0.74 0.265863
Target:  5'- -gGCGCCGCCGCUuugugCGCgcgcGGGCcggCGGg -3'
miRNA:   3'- cgCGCGGUGGCGA-----GCGa---CCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 80462 0.74 0.27201
Target:  5'- gGCGcCGCCGCCGC-CGUcGGGCcgCGc -3'
miRNA:   3'- -CGC-GCGGUGGCGaGCGaCCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 46117 0.73 0.278271
Target:  5'- aGCGCGCaCACgGCgUCGUaGGGCAUCc- -3'
miRNA:   3'- -CGCGCG-GUGgCG-AGCGaCCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 13296 0.73 0.284646
Target:  5'- cGCGCGCUACgCGggCGCcGGGCugcaGUCGGc -3'
miRNA:   3'- -CGCGCGGUG-GCgaGCGaCCCG----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 89516 0.73 0.304462
Target:  5'- cGCGCGCCgcGCUGC-CGCcGGGCGgcagcgaCGGg -3'
miRNA:   3'- -CGCGCGG--UGGCGaGCGaCCCGUa------GCC- -5'
6372 5' -61.3 NC_001847.1 + 81030 0.72 0.318252
Target:  5'- gGCGaCGCCGCCGCggacUGCgggggcgacgUGGGCGUgGGc -3'
miRNA:   3'- -CGC-GCGGUGGCGa---GCG----------ACCCGUAgCC- -5'
6372 5' -61.3 NC_001847.1 + 128991 0.72 0.321066
Target:  5'- cCGCGCCuccCUGCUCGCucaccgccgggguccUGGGCGggaagCGGg -3'
miRNA:   3'- cGCGCGGu--GGCGAGCG---------------ACCCGUa----GCC- -5'
6372 5' -61.3 NC_001847.1 + 10852 0.72 0.332506
Target:  5'- gGCGCGUgGCCGaggCGCggcGGGCG-CGGg -3'
miRNA:   3'- -CGCGCGgUGGCga-GCGa--CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 35561 0.72 0.339807
Target:  5'- gGCGCGCgACCGCgaCGa-GGGCGcCGGg -3'
miRNA:   3'- -CGCGCGgUGGCGa-GCgaCCCGUaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.