miRNA display CGI


Results 121 - 140 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 36817 0.74 0.265863
Target:  5'- cGUGCGCCACCGg-CGCgccgacuggGGGCuggCGGa -3'
miRNA:   3'- -CGCGCGGUGGCgaGCGa--------CCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 82741 0.74 0.27201
Target:  5'- cGCGCGCCGCC-CgCGCUGGaGCGcuugcCGGa -3'
miRNA:   3'- -CGCGCGGUGGcGaGCGACC-CGUa----GCC- -5'
6372 5' -61.3 NC_001847.1 + 32547 0.7 0.427563
Target:  5'- cGCGCGCaGCC-CUcggCGCUGGGCGaccuggCGGa -3'
miRNA:   3'- -CGCGCGgUGGcGA---GCGACCCGUa-----GCC- -5'
6372 5' -61.3 NC_001847.1 + 10285 0.7 0.418196
Target:  5'- cGCGgGCCGCgCGCUCGCcagucagUGcGGCGgugcugCGGc -3'
miRNA:   3'- -CGCgCGGUG-GCGAGCG-------AC-CCGUa-----GCC- -5'
6372 5' -61.3 NC_001847.1 + 132001 0.71 0.402314
Target:  5'- cCGCGCCGCCgGCgcCGCcGGGCuccCGGu -3'
miRNA:   3'- cGCGCGGUGG-CGa-GCGaCCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 10377 0.73 0.311299
Target:  5'- uCGgGUCGCCGCUCGCggcgGGGCcgCu- -3'
miRNA:   3'- cGCgCGGUGGCGAGCGa---CCCGuaGcc -5'
6372 5' -61.3 NC_001847.1 + 96309 0.72 0.318252
Target:  5'- aGUGCGCCGCgGgggaUCGCUcGGUGUCGGu -3'
miRNA:   3'- -CGCGCGGUGgCg---AGCGAcCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 45818 0.72 0.325321
Target:  5'- gGCGggaGCUGCCGCccgggccacUCGCUGGGCGgcaCGGc -3'
miRNA:   3'- -CGCg--CGGUGGCG---------AGCGACCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 58807 0.72 0.339807
Target:  5'- -aGCGCCugCGCcggCGcCUGGGCcggugcgaggGUCGGc -3'
miRNA:   3'- cgCGCGGugGCGa--GC-GACCCG----------UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 60321 0.72 0.347223
Target:  5'- cGCGCGCCACCuGCUCGC---GCGUgaGGa -3'
miRNA:   3'- -CGCGCGGUGG-CGAGCGaccCGUAg-CC- -5'
6372 5' -61.3 NC_001847.1 + 48420 0.72 0.354754
Target:  5'- aCGCGUCGCCGg-CGCUcGGGUAcUCGGu -3'
miRNA:   3'- cGCGCGGUGGCgaGCGA-CCCGU-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 20186 0.71 0.360095
Target:  5'- gGCGCGCCgguaugcgaauaccACCGcCUCGUUGGGaucuUUGGc -3'
miRNA:   3'- -CGCGCGG--------------UGGC-GAGCGACCCgu--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 64448 0.71 0.3624
Target:  5'- gGCGCccccGCCGCCGCcCGCgGcGGCG-CGGg -3'
miRNA:   3'- -CGCG----CGGUGGCGaGCGaC-CCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 115575 0.71 0.3624
Target:  5'- aCGgGCCGCgGCgaUCGC-GGGCGUCGa -3'
miRNA:   3'- cGCgCGGUGgCG--AGCGaCCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 52296 0.71 0.37016
Target:  5'- uGUGCGCgACCGCgggCGC-GGGCGgcgccaacCGGg -3'
miRNA:   3'- -CGCGCGgUGGCGa--GCGaCCCGUa-------GCC- -5'
6372 5' -61.3 NC_001847.1 + 106807 0.71 0.37016
Target:  5'- gGCGCGCgGCC-C-CGCgGGGCGcCGGg -3'
miRNA:   3'- -CGCGCGgUGGcGaGCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 97453 0.71 0.386016
Target:  5'- cGCGCGCCGCaGC-CGCgccaGGGCcgCGc -3'
miRNA:   3'- -CGCGCGGUGgCGaGCGa---CCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 29427 0.71 0.394111
Target:  5'- uGCGCGCCAgCGagCGCUgGGGCGU-GGc -3'
miRNA:   3'- -CGCGCGGUgGCgaGCGA-CCCGUAgCC- -5'
6372 5' -61.3 NC_001847.1 + 42652 0.71 0.399842
Target:  5'- cGUGCccuuugucgaagagGCCGCCGCcgCGCUGGcCAUCGa -3'
miRNA:   3'- -CGCG--------------CGGUGGCGa-GCGACCcGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 37711 0.71 0.402314
Target:  5'- aCGUGCgCGCUGCU-GCUGGGCGcgcCGGu -3'
miRNA:   3'- cGCGCG-GUGGCGAgCGACCCGUa--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.