miRNA display CGI


Results 141 - 160 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 100774 0.69 0.49917
Target:  5'- cCGCGCCAUggCGCUCGCUGGccuuucucccgGC--CGGg -3'
miRNA:   3'- cGCGCGGUG--GCGAGCGACC-----------CGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 34525 0.69 0.49917
Target:  5'- -gGCGCCggcgaugcGCCGCcCGCcGGGCGcUUGGg -3'
miRNA:   3'- cgCGCGG--------UGGCGaGCGaCCCGU-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 44416 0.7 0.427563
Target:  5'- aCGCGCCGCgagcggcugCGUUCGCgcacggGGGCG-CGGc -3'
miRNA:   3'- cGCGCGGUG---------GCGAGCGa-----CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 27076 0.7 0.419042
Target:  5'- cGgGCGgCACCGCgcccaCGCUGGagGCGUCGc -3'
miRNA:   3'- -CgCGCgGUGGCGa----GCGACC--CGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 63278 0.71 0.402314
Target:  5'- cGCGCGCUcgcgGCCGCUuccacCGCUGGGgAgggCGu -3'
miRNA:   3'- -CGCGCGG----UGGCGA-----GCGACCCgUa--GCc -5'
6372 5' -61.3 NC_001847.1 + 37711 0.71 0.402314
Target:  5'- aCGUGCgCGCUGCU-GCUGGGCGcgcCGGu -3'
miRNA:   3'- cGCGCG-GUGGCGAgCGACCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 43587 0.71 0.394111
Target:  5'- cGCGCGCC-CCaGCguggCGCUGGGgc-CGGu -3'
miRNA:   3'- -CGCGCGGuGG-CGa---GCGACCCguaGCC- -5'
6372 5' -61.3 NC_001847.1 + 29427 0.71 0.394111
Target:  5'- uGCGCGCCAgCGagCGCUgGGGCGU-GGc -3'
miRNA:   3'- -CGCGCGGUgGCgaGCGA-CCCGUAgCC- -5'
6372 5' -61.3 NC_001847.1 + 63092 0.71 0.386016
Target:  5'- uGCGCGCCaACCGCcgCGCgu-GCGUCGc -3'
miRNA:   3'- -CGCGCGG-UGGCGa-GCGaccCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 46755 0.71 0.378032
Target:  5'- gGCGCGCCcgcCCGCcgCGCgGGGC--CGGu -3'
miRNA:   3'- -CGCGCGGu--GGCGa-GCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 79241 0.7 0.436186
Target:  5'- gGCGCGCUccccgaGCUGCUaGCc-GGCGUCGGg -3'
miRNA:   3'- -CGCGCGG------UGGCGAgCGacCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 55469 0.7 0.436186
Target:  5'- cGCGCGCCgcgcuaGCCGCUgcccUGCuaUGGGCGacgUGGg -3'
miRNA:   3'- -CGCGCGG------UGGCGA----GCG--ACCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 54409 0.69 0.489913
Target:  5'- cGgGCGCCGCCGCg-GUU-GGCcUCGGc -3'
miRNA:   3'- -CgCGCGGUGGCGagCGAcCCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 48763 0.69 0.484397
Target:  5'- cGCGCGCCcgccgccgcggcccGCCGcCUCGUcugcGGGCGccucgccggcgccaUCGGg -3'
miRNA:   3'- -CGCGCGG--------------UGGC-GAGCGa---CCCGU--------------AGCC- -5'
6372 5' -61.3 NC_001847.1 + 8230 0.69 0.471644
Target:  5'- aGCuGCGCCACgCGCUgGCcUGcGGCAgcaacgagCGGu -3'
miRNA:   3'- -CG-CGCGGUG-GCGAgCG-AC-CCGUa-------GCC- -5'
6372 5' -61.3 NC_001847.1 + 107204 0.69 0.46264
Target:  5'- cGCGCGCCGCgGCccaggCGCUGuccGCGUCc- -3'
miRNA:   3'- -CGCGCGGUGgCGa----GCGACc--CGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 45510 0.69 0.46264
Target:  5'- gGCGgG-CGCCGC-CGCcGGGCGgcgCGGa -3'
miRNA:   3'- -CGCgCgGUGGCGaGCGaCCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 44255 0.7 0.453727
Target:  5'- aGCGCGCCGgCGa---CUGGGCAaCGGc -3'
miRNA:   3'- -CGCGCGGUgGCgagcGACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 28328 0.7 0.444908
Target:  5'- uGCGUGCCGCuCGC-CgGC-GGGCAgcgCGGc -3'
miRNA:   3'- -CGCGCGGUG-GCGaG-CGaCCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 36368 0.7 0.444908
Target:  5'- cGCgGCGCCGCCGCg-GCccGGGCAgcgcgcgccgCGGc -3'
miRNA:   3'- -CG-CGCGGUGGCGagCGa-CCCGUa---------GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.