miRNA display CGI


Results 61 - 80 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 97585 0.66 0.683859
Target:  5'- -aGCGCCGCCGCgucuucCGaaGGGCcgcccGUCGc -3'
miRNA:   3'- cgCGCGGUGGCGa-----GCgaCCCG-----UAGCc -5'
6372 5' -61.3 NC_001847.1 + 83837 0.66 0.683859
Target:  5'- -aGCGCCGCCGCa-GCacGGGC--UGGa -3'
miRNA:   3'- cgCGCGGUGGCGagCGa-CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 73884 0.66 0.664245
Target:  5'- cCGCGCgCGCCGCggaCGCggacGGCGUUGc -3'
miRNA:   3'- cGCGCG-GUGGCGa--GCGac--CCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 66361 0.66 0.664245
Target:  5'- cGCGCgGCCGCCGCggCGaUGGaGC-UCGc -3'
miRNA:   3'- -CGCG-CGGUGGCGa-GCgACC-CGuAGCc -5'
6372 5' -61.3 NC_001847.1 + 53295 0.66 0.664245
Target:  5'- cGCGCGCUcgaucGCCGCcagUGCggcGGGCGacaGGa -3'
miRNA:   3'- -CGCGCGG-----UGGCGa--GCGa--CCCGUag-CC- -5'
6372 5' -61.3 NC_001847.1 + 95523 0.66 0.664245
Target:  5'- gGCGCGCCAg-GCUUGCcccugGGGC-UgGGg -3'
miRNA:   3'- -CGCGCGGUggCGAGCGa----CCCGuAgCC- -5'
6372 5' -61.3 NC_001847.1 + 75158 0.66 0.664245
Target:  5'- uGCGUGCUagGCCGC-CGCgucGGGacCAUCGu -3'
miRNA:   3'- -CGCGCGG--UGGCGaGCGa--CCC--GUAGCc -5'
6372 5' -61.3 NC_001847.1 + 75830 0.66 0.664245
Target:  5'- -nGCGCCGCCgGCgccgCGCcuggcacccUGGGUA-CGGu -3'
miRNA:   3'- cgCGCGGUGG-CGa---GCG---------ACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 58867 0.66 0.660308
Target:  5'- cGCGCGCCAggcaguguuagucUCGUUgGCgaggugcgccuccauGGCGUCGGg -3'
miRNA:   3'- -CGCGCGGU-------------GGCGAgCGac-------------CCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 116628 0.66 0.654397
Target:  5'- gGCGCGCCcgcAgCGCUgGCcucGGCAgccgCGGg -3'
miRNA:   3'- -CGCGCGG---UgGCGAgCGac-CCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 104948 0.66 0.664245
Target:  5'- gGCGCGCgCGCCGC--GCaccGCGUCGGc -3'
miRNA:   3'- -CGCGCG-GUGGCGagCGaccCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 50341 0.66 0.673087
Target:  5'- cCGgGCUGCCGCUaggguaaagcuggCGCUGgccGGCGUCGc -3'
miRNA:   3'- cGCgCGGUGGCGA-------------GCGAC---CCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 13535 0.66 0.683859
Target:  5'- aGCG-GCagcaACCGC-CGCcgGGGCGgcgCGGu -3'
miRNA:   3'- -CGCgCGg---UGGCGaGCGa-CCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 127796 0.66 0.682882
Target:  5'- aGCGCGCugacggcuacCACCGCUucuUGCaGGcgaaauaGCGUCGGu -3'
miRNA:   3'- -CGCGCG----------GUGGCGA---GCGaCC-------CGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 121650 0.66 0.681904
Target:  5'- gGCGCGCacuucgcggaagGCCGC-CGCUGuGGgGUgCGGc -3'
miRNA:   3'- -CGCGCGg-----------UGGCGaGCGAC-CCgUA-GCC- -5'
6372 5' -61.3 NC_001847.1 + 116427 0.66 0.674068
Target:  5'- cGCGCGCUuggGCUCGa-GGGCggUGGg -3'
miRNA:   3'- -CGCGCGGuggCGAGCgaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 113061 0.66 0.674068
Target:  5'- aGCGCGUCGgCGCaCGuCUGcGCaAUCGGa -3'
miRNA:   3'- -CGCGCGGUgGCGaGC-GACcCG-UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 56733 0.66 0.674068
Target:  5'- cGCGCGCCAgcagcgcgcCCGCa-GCggcgGGGUccUCGGc -3'
miRNA:   3'- -CGCGCGGU---------GGCGagCGa---CCCGu-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 42729 0.66 0.674068
Target:  5'- gGCGgGCgGCCGC--GC-GGGCggCGGg -3'
miRNA:   3'- -CGCgCGgUGGCGagCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 29258 0.66 0.674068
Target:  5'- uGCGCGCCggACgCGCUgGC-GGcGCAccCGGa -3'
miRNA:   3'- -CGCGCGG--UG-GCGAgCGaCC-CGUa-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.