Results 81 - 100 of 652 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6372 | 5' | -61.3 | NC_001847.1 | + | 122023 | 0.66 | 0.654397 |
Target: 5'- gGCGCGgCGCCGCccgCGCgccccGGCcgCGa -3' miRNA: 3'- -CGCGCgGUGGCGa--GCGac---CCGuaGCc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 107139 | 0.66 | 0.654397 |
Target: 5'- aGCGCgGCaCGCCGCgCGCUGcaGCG-CGGc -3' miRNA: 3'- -CGCG-CG-GUGGCGaGCGACc-CGUaGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 9721 | 0.66 | 0.654397 |
Target: 5'- uGCGCgGCCACuCGCUUGCcacgcgaccGGGCGggcccugcccCGGg -3' miRNA: 3'- -CGCG-CGGUG-GCGAGCGa--------CCCGUa---------GCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 49806 | 0.66 | 0.653412 |
Target: 5'- gGUGCGCUGCUGCUgggcgCGCUGGcggccuggacgcuGCAggCGGc -3' miRNA: 3'- -CGCGCGGUGGCGA-----GCGACC-------------CGUa-GCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 132037 | 0.66 | 0.653412 |
Target: 5'- -gGCGCUcuaccugGCCGCuaUCGUgggGGGCGUCa- -3' miRNA: 3'- cgCGCGG-------UGGCG--AGCGa--CCCGUAGcc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 131827 | 0.66 | 0.65144 |
Target: 5'- cUGCGCgGCCGCcuaccCGCuguaccugaaaaucUGGGCGUgGGu -3' miRNA: 3'- cGCGCGgUGGCGa----GCG--------------ACCCGUAgCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 91683 | 0.66 | 0.644534 |
Target: 5'- cGCGCGCUcggcgACCGCgccgUCGCcccGGGUcgCGa -3' miRNA: 3'- -CGCGCGG-----UGGCG----AGCGa--CCCGuaGCc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 116628 | 0.66 | 0.654397 |
Target: 5'- gGCGCGCCcgcAgCGCUgGCcucGGCAgccgCGGg -3' miRNA: 3'- -CGCGCGG---UgGCGAgCGac-CCGUa---GCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 58867 | 0.66 | 0.660308 |
Target: 5'- cGCGCGCCAggcaguguuagucUCGUUgGCgaggugcgccuccauGGCGUCGGg -3' miRNA: 3'- -CGCGCGGU-------------GGCGAgCGac-------------CCGUAGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 75830 | 0.66 | 0.664245 |
Target: 5'- -nGCGCCGCCgGCgccgCGCcuggcacccUGGGUA-CGGu -3' miRNA: 3'- cgCGCGGUGG-CGa---GCG---------ACCCGUaGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 42729 | 0.66 | 0.674068 |
Target: 5'- gGCGgGCgGCCGC--GC-GGGCggCGGg -3' miRNA: 3'- -CGCgCGgUGGCGagCGaCCCGuaGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 29258 | 0.66 | 0.674068 |
Target: 5'- uGCGCGCCggACgCGCUgGC-GGcGCAccCGGa -3' miRNA: 3'- -CGCGCGG--UG-GCGAgCGaCC-CGUa-GCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 50341 | 0.66 | 0.673087 |
Target: 5'- cCGgGCUGCCGCUaggguaaagcuggCGCUGgccGGCGUCGc -3' miRNA: 3'- cGCgCGGUGGCGA-------------GCGAC---CCGUAGCc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 104948 | 0.66 | 0.664245 |
Target: 5'- gGCGCGCgCGCCGC--GCaccGCGUCGGc -3' miRNA: 3'- -CGCGCG-GUGGCGagCGaccCGUAGCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 73884 | 0.66 | 0.664245 |
Target: 5'- cCGCGCgCGCCGCggaCGCggacGGCGUUGc -3' miRNA: 3'- cGCGCG-GUGGCGa--GCGac--CCGUAGCc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 66361 | 0.66 | 0.664245 |
Target: 5'- cGCGCgGCCGCCGCggCGaUGGaGC-UCGc -3' miRNA: 3'- -CGCG-CGGUGGCGa-GCgACC-CGuAGCc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 53295 | 0.66 | 0.664245 |
Target: 5'- cGCGCGCUcgaucGCCGCcagUGCggcGGGCGacaGGa -3' miRNA: 3'- -CGCGCGG-----UGGCGa--GCGa--CCCGUag-CC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 95523 | 0.66 | 0.664245 |
Target: 5'- gGCGCGCCAg-GCUUGCcccugGGGC-UgGGg -3' miRNA: 3'- -CGCGCGGUggCGAGCGa----CCCGuAgCC- -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 75158 | 0.66 | 0.664245 |
Target: 5'- uGCGUGCUagGCCGC-CGCgucGGGacCAUCGu -3' miRNA: 3'- -CGCGCGG--UGGCGaGCGa--CCC--GUAGCc -5' |
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6372 | 5' | -61.3 | NC_001847.1 | + | 96940 | 0.66 | 0.644534 |
Target: 5'- aGCGgGUCGCCGCUaGCgGcGGCAaagucCGGg -3' miRNA: 3'- -CGCgCGGUGGCGAgCGaC-CCGUa----GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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