miRNA display CGI


Results 121 - 140 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 29899 0.67 0.634661
Target:  5'- gGCGgcccUGCCgGCCGC-CGCgggGGGCcccUCGGg -3'
miRNA:   3'- -CGC----GCGG-UGGCGaGCGa--CCCGu--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 21742 0.67 0.634661
Target:  5'- -gGCGCCGgcCCGCgcgCGCggggGGGCcgcCGGc -3'
miRNA:   3'- cgCGCGGU--GGCGa--GCGa---CCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 30957 0.66 0.644534
Target:  5'- cGCGUGCUGCCGg-CGCUcgacGGGCGcaaGGa -3'
miRNA:   3'- -CGCGCGGUGGCgaGCGA----CCCGUag-CC- -5'
6372 5' -61.3 NC_001847.1 + 58078 0.66 0.644534
Target:  5'- cGCGCGCgCGCCGCa-GCgGGuGCcgCGc -3'
miRNA:   3'- -CGCGCG-GUGGCGagCGaCC-CGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 71399 0.66 0.644534
Target:  5'- cCGCGCCGCCagGCggCGCUGuuGC-UCGGc -3'
miRNA:   3'- cGCGCGGUGG--CGa-GCGACc-CGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 58867 0.66 0.660308
Target:  5'- cGCGCGCCAggcaguguuagucUCGUUgGCgaggugcgccuccauGGCGUCGGg -3'
miRNA:   3'- -CGCGCGGU-------------GGCGAgCGac-------------CCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 116628 0.66 0.654397
Target:  5'- gGCGCGCCcgcAgCGCUgGCcucGGCAgccgCGGg -3'
miRNA:   3'- -CGCGCGG---UgGCGAgCGac-CCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 98802 0.66 0.654397
Target:  5'- gGCGCGCCGCgGCgCGC--GGCA-CGa -3'
miRNA:   3'- -CGCGCGGUGgCGaGCGacCCGUaGCc -5'
6372 5' -61.3 NC_001847.1 + 86381 0.66 0.654397
Target:  5'- gGCGgGCCGCgGCg-GC-GGGCGcgCGGc -3'
miRNA:   3'- -CGCgCGGUGgCGagCGaCCCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 127340 0.66 0.654397
Target:  5'- gGCG-GCCgGCUGC-CGCggcagGGGCggCGGg -3'
miRNA:   3'- -CGCgCGG-UGGCGaGCGa----CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 122023 0.66 0.654397
Target:  5'- gGCGCGgCGCCGCccgCGCgccccGGCcgCGa -3'
miRNA:   3'- -CGCGCgGUGGCGa--GCGac---CCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 107139 0.66 0.654397
Target:  5'- aGCGCgGCaCGCCGCgCGCUGcaGCG-CGGc -3'
miRNA:   3'- -CGCG-CG-GUGGCGaGCGACc-CGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 18703 0.67 0.634661
Target:  5'- cCGCGUCACCGCcagCGCcgcggGGaGCGccagCGGg -3'
miRNA:   3'- cGCGCGGUGGCGa--GCGa----CC-CGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 9721 0.66 0.654397
Target:  5'- uGCGCgGCCACuCGCUUGCcacgcgaccGGGCGggcccugcccCGGg -3'
miRNA:   3'- -CGCG-CGGUG-GCGAGCGa--------CCCGUa---------GCC- -5'
6372 5' -61.3 NC_001847.1 + 49806 0.66 0.653412
Target:  5'- gGUGCGCUGCUGCUgggcgCGCUGGcggccuggacgcuGCAggCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGA-----GCGACC-------------CGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 132037 0.66 0.653412
Target:  5'- -gGCGCUcuaccugGCCGCuaUCGUgggGGGCGUCa- -3'
miRNA:   3'- cgCGCGG-------UGGCG--AGCGa--CCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 131827 0.66 0.65144
Target:  5'- cUGCGCgGCCGCcuaccCGCuguaccugaaaaucUGGGCGUgGGu -3'
miRNA:   3'- cGCGCGgUGGCGa----GCG--------------ACCCGUAgCC- -5'
6372 5' -61.3 NC_001847.1 + 91683 0.66 0.644534
Target:  5'- cGCGCGCUcggcgACCGCgccgUCGCcccGGGUcgCGa -3'
miRNA:   3'- -CGCGCGG-----UGGCG----AGCGa--CCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 96940 0.66 0.644534
Target:  5'- aGCGgGUCGCCGCUaGCgGcGGCAaagucCGGg -3'
miRNA:   3'- -CGCgCGGUGGCGAgCGaC-CCGUa----GCC- -5'
6372 5' -61.3 NC_001847.1 + 78070 0.66 0.644534
Target:  5'- aGCGCugGCCGCCGC--GCUGGGguUg-- -3'
miRNA:   3'- -CGCG--CGGUGGCGagCGACCCguAgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.