miRNA display CGI


Results 21 - 40 of 652 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 69077 0.66 0.689715
Target:  5'- aCGCGCuCGCCGCgucuggcgccgcgCGCggacGGGCGggccgcguucUCGGc -3'
miRNA:   3'- cGCGCG-GUGGCGa------------GCGa---CCCGU----------AGCC- -5'
6372 5' -61.3 NC_001847.1 + 85179 0.66 0.683859
Target:  5'- cGUGCacgGCCugCGCguacucggCGCcGGGCAgccCGGc -3'
miRNA:   3'- -CGCG---CGGugGCGa-------GCGaCCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 103723 0.66 0.683859
Target:  5'- cCGCcgGCCGCCGCcCGCc-GGCGcCGGg -3'
miRNA:   3'- cGCG--CGGUGGCGaGCGacCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 58658 0.66 0.683859
Target:  5'- cCGgGUCGCaCGCUUGCggcgguUGGGCGggCGGc -3'
miRNA:   3'- cGCgCGGUG-GCGAGCG------ACCCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 106741 0.66 0.683859
Target:  5'- uGCGCGCC-CgCGCUgGCgccGcGGCGggGGg -3'
miRNA:   3'- -CGCGCGGuG-GCGAgCGa--C-CCGUagCC- -5'
6372 5' -61.3 NC_001847.1 + 81376 0.66 0.683859
Target:  5'- gGUGCuGCCGCC-CUCGCcgccucGGGCcgcCGGa -3'
miRNA:   3'- -CGCG-CGGUGGcGAGCGa-----CCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 28723 0.66 0.683859
Target:  5'- uGCGCGgCGCgGC-CGC-GGGCAgcgUCGc -3'
miRNA:   3'- -CGCGCgGUGgCGaGCGaCCCGU---AGCc -5'
6372 5' -61.3 NC_001847.1 + 45769 0.66 0.683859
Target:  5'- uGCGCGUcuaaguCAUCGCgcacggCGCc-GGCGUCGGc -3'
miRNA:   3'- -CGCGCG------GUGGCGa-----GCGacCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 122379 0.66 0.683859
Target:  5'- aGCGCGUccagcgacauCugCGCgaagaaggCGCUGGGCcgCa- -3'
miRNA:   3'- -CGCGCG----------GugGCGa-------GCGACCCGuaGcc -5'
6372 5' -61.3 NC_001847.1 + 91357 0.66 0.683859
Target:  5'- gGCGCGCCGgCGCgCGCguccaGCAcCGGc -3'
miRNA:   3'- -CGCGCGGUgGCGaGCGacc--CGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 71992 0.66 0.683859
Target:  5'- uGCGCGCCugCGC--GCcGGGaucCGGu -3'
miRNA:   3'- -CGCGCGGugGCGagCGaCCCguaGCC- -5'
6372 5' -61.3 NC_001847.1 + 16897 0.66 0.683859
Target:  5'- cGCuGCGUCGCCGguCUCGCgcGGGCG--GGa -3'
miRNA:   3'- -CG-CGCGGUGGC--GAGCGa-CCCGUagCC- -5'
6372 5' -61.3 NC_001847.1 + 3928 0.66 0.683859
Target:  5'- uGCGCGCC-CgCGCUgGCgccGcGGCGggGGg -3'
miRNA:   3'- -CGCGCGGuG-GCGAgCGa--C-CCGUagCC- -5'
6372 5' -61.3 NC_001847.1 + 910 0.66 0.683859
Target:  5'- cCGCcgGCCGCCGCcCGCc-GGCGcCGGg -3'
miRNA:   3'- cGCG--CGGUGGCGaGCGacCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 97585 0.66 0.683859
Target:  5'- -aGCGCCGCCGCgucuucCGaaGGGCcgcccGUCGc -3'
miRNA:   3'- cgCGCGGUGGCGa-----GCgaCCCG-----UAGCc -5'
6372 5' -61.3 NC_001847.1 + 83837 0.66 0.683859
Target:  5'- -aGCGCCGCCGCa-GCacGGGC--UGGa -3'
miRNA:   3'- cgCGCGGUGGCGagCGa-CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 13535 0.66 0.683859
Target:  5'- aGCG-GCagcaACCGC-CGCcgGGGCGgcgCGGu -3'
miRNA:   3'- -CGCgCGg---UGGCGaGCGa-CCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 124988 0.66 0.683859
Target:  5'- cGCGCGUCGaaaaagcccucCCGCUCGCgcuacGGC--CGGg -3'
miRNA:   3'- -CGCGCGGU-----------GGCGAGCGac---CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 127796 0.66 0.682882
Target:  5'- aGCGCGCugacggcuacCACCGCUucuUGCaGGcgaaauaGCGUCGGu -3'
miRNA:   3'- -CGCGCG----------GUGGCGA---GCGaCC-------CGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 46551 0.66 0.682882
Target:  5'- cGCGCGcCCGCCcacgucgaacgucGCguaguccgCGCcGGGCGUCa- -3'
miRNA:   3'- -CGCGC-GGUGG-------------CGa-------GCGaCCCGUAGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.