miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 118992 0.66 0.893022
Target:  5'- -gGCGGCGUGCGacauGCUGgcGCUGAucGCAg -3'
miRNA:   3'- gaCGCUGCACGCc---CGGCa-CGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 31963 0.67 0.856546
Target:  5'- -cGCGGCGgcgGCGGGCCccG-UGGACGc -3'
miRNA:   3'- gaCGCUGCa--CGCCCGGcaCgAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 77574 0.67 0.848604
Target:  5'- -cGCGGCcGcGCGGGCCGaGCUc-GCAc -3'
miRNA:   3'- gaCGCUG-CaCGCCCGGCaCGAuuUGU- -5'
6373 3' -55.9 NC_001847.1 + 79084 0.67 0.832124
Target:  5'- gUGCGACGUGUGc-CCGUGCgccGCGc -3'
miRNA:   3'- gACGCUGCACGCccGGCACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 7251 0.67 0.8149
Target:  5'- -gGUGGCuGUGCGGGCgCG-GCggGGGCAc -3'
miRNA:   3'- gaCGCUG-CACGCCCG-GCaCGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 36001 0.67 0.823601
Target:  5'- gCUGCaGGCGgccGCGGGCgugGUGCUGGGg- -3'
miRNA:   3'- -GACG-CUGCa--CGCCCGg--CACGAUUUgu -5'
6373 3' -55.9 NC_001847.1 + 112555 0.67 0.8149
Target:  5'- -cGCGACcggGCGGGCCcUGCcccgGGGCGc -3'
miRNA:   3'- gaCGCUGca-CGCCCGGcACGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 43597 0.67 0.848604
Target:  5'- -aGCGugGcGCugGGGCCgGUGCUGGccACGg -3'
miRNA:   3'- gaCGCugCaCG--CCCGG-CACGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 69295 0.67 0.832124
Target:  5'- -cGCgGGCGUGCGGGCgGaccgGCUGc--- -3'
miRNA:   3'- gaCG-CUGCACGCCCGgCa---CGAUuugu -5'
6373 3' -55.9 NC_001847.1 + 123468 0.67 0.848604
Target:  5'- -gGCGACGgccgccGCGGGCuCG-GCUGGGg- -3'
miRNA:   3'- gaCGCUGCa-----CGCCCG-GCaCGAUUUgu -5'
6373 3' -55.9 NC_001847.1 + 103033 0.67 0.840461
Target:  5'- -gGCGGCGgGCGGGCCGcaGCc--GCGu -3'
miRNA:   3'- gaCGCUGCaCGCCCGGCa-CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 125506 0.67 0.840461
Target:  5'- gCUGCucgaGCG-GCGGGCCG-GCgcGGCGg -3'
miRNA:   3'- -GACGc---UGCaCGCCCGGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 96347 0.67 0.823601
Target:  5'- -gGCGGCGgcaaugGCgGGGCCG-GCgguGGCAa -3'
miRNA:   3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 125797 0.67 0.8149
Target:  5'- -aGCGAguCG-GCGGGCCGgcggGCgu-GCAg -3'
miRNA:   3'- gaCGCU--GCaCGCCCGGCa---CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 9742 0.67 0.8149
Target:  5'- -cGCGACcggGCGGGCCcUGCcccgGGGCGc -3'
miRNA:   3'- gaCGCUGca-CGCCCGGcACGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 114050 0.67 0.8149
Target:  5'- -gGCGugGUGaUGGcGUCGUGCUuuACc -3'
miRNA:   3'- gaCGCugCAC-GCC-CGGCACGAuuUGu -5'
6373 3' -55.9 NC_001847.1 + 5062 0.67 0.8149
Target:  5'- -cGgGACGgacgGCGGGCCGggaGCgggcGGCAg -3'
miRNA:   3'- gaCgCUGCa---CGCCCGGCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 134502 0.67 0.823601
Target:  5'- gUGUa--GUGUGGGCCGUGCggccGCGg -3'
miRNA:   3'- gACGcugCACGCCCGGCACGauu-UGU- -5'
6373 3' -55.9 NC_001847.1 + 2193 0.67 0.8149
Target:  5'- -gGCGGCGUGCGGGCgcacCUcAAACAu -3'
miRNA:   3'- gaCGCUGCACGCCCGgcacGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 32765 0.67 0.832124
Target:  5'- -gGCGGCGcuucGCGacGGCCGgccGCUGGACGc -3'
miRNA:   3'- gaCGCUGCa---CGC--CCGGCa--CGAUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.