miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 2193 0.67 0.8149
Target:  5'- -gGCGGCGUGCGGGCgcacCUcAAACAu -3'
miRNA:   3'- gaCGCUGCACGCCCGgcacGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 123468 0.67 0.848604
Target:  5'- -gGCGACGgccgccGCGGGCuCG-GCUGGGg- -3'
miRNA:   3'- gaCGCUGCa-----CGCCCG-GCaCGAUUUgu -5'
6373 3' -55.9 NC_001847.1 + 73239 0.67 0.855761
Target:  5'- -gGCGGCG-GCGcgggcgcgcucgaGGCCGUGCgc-GCAc -3'
miRNA:   3'- gaCGCUGCaCGC-------------CCGGCACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 14343 0.67 0.856546
Target:  5'- -gGCGugGUgGCGGcGCC-UGCgggGAACGc -3'
miRNA:   3'- gaCGCugCA-CGCC-CGGcACGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 117531 0.67 0.856546
Target:  5'- -gGCGACGa-CGaGGCCGUGCgcAACc -3'
miRNA:   3'- gaCGCUGCacGC-CCGGCACGauUUGu -5'
6373 3' -55.9 NC_001847.1 + 22951 0.68 0.806029
Target:  5'- gCUGgGugGgcugggGUGGGCUGgGCUGGGCu -3'
miRNA:   3'- -GACgCugCa-----CGCCCGGCaCGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 57044 0.68 0.787813
Target:  5'- -cGCGcCcUGUGGGCCGaggcgGCUAAGCu -3'
miRNA:   3'- gaCGCuGcACGCCCGGCa----CGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 44302 0.68 0.787813
Target:  5'- -cGCGGCGcgGCGGGCCa-GCgccaGAGCGg -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGcaCGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 133567 0.68 0.787813
Target:  5'- -aGCGGCGcgcugGCGcGcGCCGUGCUGGccucGCGg -3'
miRNA:   3'- gaCGCUGCa----CGC-C-CGGCACGAUU----UGU- -5'
6373 3' -55.9 NC_001847.1 + 68793 0.68 0.796997
Target:  5'- -cGCGGCGgccgcgcgaGCGGGCCGacggGggGAACAa -3'
miRNA:   3'- gaCGCUGCa--------CGCCCGGCa---CgaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 37594 0.68 0.809597
Target:  5'- gCUGCGGCGgccGgGGGCCGgcccgcGCUcuuuugcccgacgggGAGCAg -3'
miRNA:   3'- -GACGCUGCa--CgCCCGGCa-----CGA---------------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 71442 0.68 0.806029
Target:  5'- -cGCGACGgGCGcGGCUuugaGCUGAGCGu -3'
miRNA:   3'- gaCGCUGCaCGC-CCGGca--CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 59559 0.68 0.778485
Target:  5'- -gGCGGCGgggGCGGuGCCG-GCggAAGCu -3'
miRNA:   3'- gaCGCUGCa--CGCC-CGGCaCGa-UUUGu -5'
6373 3' -55.9 NC_001847.1 + 108034 0.68 0.778485
Target:  5'- -cGCGGCGgccgGCGGGgCGcGCgcGGCAa -3'
miRNA:   3'- gaCGCUGCa---CGCCCgGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 28088 0.68 0.787813
Target:  5'- gCUGUGGCGccUGCccgGGGCCGcGCgcGACAc -3'
miRNA:   3'- -GACGCUGC--ACG---CCCGGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 8125 0.68 0.796997
Target:  5'- -cGCGGgGccccagggGCGGGCgGUGCUGcGCGa -3'
miRNA:   3'- gaCGCUgCa-------CGCCCGgCACGAUuUGU- -5'
6373 3' -55.9 NC_001847.1 + 45527 0.68 0.796997
Target:  5'- -gGCGGCGcgGacgGGGCCGUGCcgcGCAg -3'
miRNA:   3'- gaCGCUGCa-Cg--CCCGGCACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 85793 0.68 0.806029
Target:  5'- gUGCGcgucgaGgGUGCGGGCgCGUGCagcGACGg -3'
miRNA:   3'- gACGC------UgCACGCCCG-GCACGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 5221 0.68 0.778485
Target:  5'- -cGCGGCGgccgGCGGGgCGcGCgcGGCAa -3'
miRNA:   3'- gaCGCUGCa---CGCCCgGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 134632 0.68 0.787813
Target:  5'- -aGCGugGgcuggggGCGGGCCG-GC--AGCAg -3'
miRNA:   3'- gaCGCugCa------CGCCCGGCaCGauUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.