Results 101 - 120 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 100644 | 0.69 | 0.709964 |
Target: 5'- gCUGCGGCGccaGGGCCGcGCUGcugcGGCGg -3' miRNA: 3'- -GACGCUGCacgCCCGGCaCGAU----UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 58671 | 0.7 | 0.699829 |
Target: 5'- uUGCGGCGguuggGCGGGCgGcagGCUGGcCAu -3' miRNA: 3'- gACGCUGCa----CGCCCGgCa--CGAUUuGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 128651 | 0.7 | 0.693719 |
Target: 5'- -gGCGACGccgcuaccuacgaccUGCaGGCCGUGCgGGACu -3' miRNA: 3'- gaCGCUGC---------------ACGcCCGGCACGaUUUGu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 16056 | 0.7 | 0.689635 |
Target: 5'- -cGCGGCGgccGCGGcGCCucUGCUGGGCGc -3' miRNA: 3'- gaCGCUGCa--CGCC-CGGc-ACGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 3009 | 0.7 | 0.688613 |
Target: 5'- -cGCGcuccaccGCGUcGCGGGCCGcGCcGAGCAg -3' miRNA: 3'- gaCGC-------UGCA-CGCCCGGCaCGaUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 53986 | 0.7 | 0.66911 |
Target: 5'- -aGCGGCGcgGCGGGCCaGUcgucGCUuAACAc -3' miRNA: 3'- gaCGCUGCa-CGCCCGG-CA----CGAuUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 105822 | 0.7 | 0.688613 |
Target: 5'- -cGCGcuccaccGCGUcGCGGGCCGcGCcGAGCAg -3' miRNA: 3'- gaCGC-------UGCA-CGCCCGGCaCGaUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 63428 | 0.7 | 0.66911 |
Target: 5'- -cGCGGCGccgGCGGGCCG-GCgcaccgcGCAg -3' miRNA: 3'- gaCGCUGCa--CGCCCGGCaCGauu----UGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 70463 | 0.7 | 0.678366 |
Target: 5'- aCUGCGACacgcGCGGGCgcccgguggauggCGUGCUGGugAc -3' miRNA: 3'- -GACGCUGca--CGCCCG-------------GCACGAUUugU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 9007 | 0.71 | 0.648462 |
Target: 5'- uUGCcauCGUGCGcGGCCGcgacccccUGCUAGACGc -3' miRNA: 3'- gACGcu-GCACGC-CCGGC--------ACGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 119526 | 0.71 | 0.648462 |
Target: 5'- -gGCGGCG-GcCGcGGCCGgcagGCUGGGCAa -3' miRNA: 3'- gaCGCUGCaC-GC-CCGGCa---CGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 18415 | 0.71 | 0.627761 |
Target: 5'- -cGCGGCGUGCaGGGCCuuggccacGUGCgccGCGg -3' miRNA: 3'- gaCGCUGCACG-CCCGG--------CACGauuUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 29073 | 0.71 | 0.596755 |
Target: 5'- gCUGCGugGcggugGCGGGCggCGUGCUGuuUAa -3' miRNA: 3'- -GACGCugCa----CGCCCG--GCACGAUuuGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 81054 | 0.71 | 0.627761 |
Target: 5'- -gGCGACGUgggcGUGGGCgGggccugGCUGGACGg -3' miRNA: 3'- gaCGCUGCA----CGCCCGgCa-----CGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 102581 | 0.71 | 0.627761 |
Target: 5'- -aGCGGCGgGCGGcGCCauccUGCUGGGCGa -3' miRNA: 3'- gaCGCUGCaCGCC-CGGc---ACGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 66177 | 0.71 | 0.638114 |
Target: 5'- gUGCc-CGcGCGGGCCGcGCUGGACGc -3' miRNA: 3'- gACGcuGCaCGCCCGGCaCGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 86388 | 0.72 | 0.555816 |
Target: 5'- -cGCGGCG-GCGGGCgCGcgGCUGAGuCAu -3' miRNA: 3'- gaCGCUGCaCGCCCG-GCa-CGAUUU-GU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 129254 | 0.72 | 0.586463 |
Target: 5'- uCUGCGACG-GCGcGGCCGcccUGCgc-GCAg -3' miRNA: 3'- -GACGCUGCaCGC-CCGGC---ACGauuUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 134164 | 0.72 | 0.535643 |
Target: 5'- -gGUG-CGUGCGGGCCGgcGCaUAGACGc -3' miRNA: 3'- gaCGCuGCACGCCCGGCa-CG-AUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 82472 | 0.72 | 0.552775 |
Target: 5'- gUGCGGCGUGCcgugggacgagcccGcGGCCGUGC-GGGCGg -3' miRNA: 3'- gACGCUGCACG--------------C-CCGGCACGaUUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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