miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 134205 0.68 0.787813
Target:  5'- -aGCGGCGcgcGCGGGCCGaggGCg--GCGg -3'
miRNA:   3'- gaCGCUGCa--CGCCCGGCa--CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 134632 0.68 0.787813
Target:  5'- -aGCGugGgcuggggGCGGGCCG-GC--AGCAg -3'
miRNA:   3'- gaCGCugCa------CGCCCGGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 44302 0.68 0.787813
Target:  5'- -cGCGGCGcgGCGGGCCa-GCgccaGAGCGg -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGcaCGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 22951 0.68 0.806029
Target:  5'- gCUGgGugGgcugggGUGGGCUGgGCUGGGCu -3'
miRNA:   3'- -GACgCugCa-----CGCCCGGCaCGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 73767 0.68 0.806029
Target:  5'- -gGCGGCGgcGCGGGCCGcuacgaGCgcgGGGCGc -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGCa-----CGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 33708 0.68 0.796997
Target:  5'- -cGCGGCGgcGCGuGGCCGaGCUGGGgGa -3'
miRNA:   3'- gaCGCUGCa-CGC-CCGGCaCGAUUUgU- -5'
6373 3' -55.9 NC_001847.1 + 57044 0.68 0.787813
Target:  5'- -cGCGcCcUGUGGGCCGaggcgGCUAAGCu -3'
miRNA:   3'- gaCGCuGcACGCCCGGCa----CGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 45527 0.68 0.796997
Target:  5'- -gGCGGCGcgGacgGGGCCGUGCcgcGCAg -3'
miRNA:   3'- gaCGCUGCa-Cg--CCCGGCACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 72583 0.68 0.805133
Target:  5'- -cGCGAUGcGCGGGCUGggccaaaacgcgcUGCUGGccGCAc -3'
miRNA:   3'- gaCGCUGCaCGCCCGGC-------------ACGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 73239 0.67 0.855761
Target:  5'- -gGCGGCG-GCGcgggcgcgcucgaGGCCGUGCgc-GCAc -3'
miRNA:   3'- gaCGCUGCaCGC-------------CCGGCACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 5062 0.67 0.8149
Target:  5'- -cGgGACGgacgGCGGGCCGggaGCgggcGGCAg -3'
miRNA:   3'- gaCgCUGCa---CGCCCGGCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 114050 0.67 0.8149
Target:  5'- -gGCGugGUGaUGGcGUCGUGCUuuACc -3'
miRNA:   3'- gaCGCugCAC-GCC-CGGCACGAuuUGu -5'
6373 3' -55.9 NC_001847.1 + 9742 0.67 0.8149
Target:  5'- -cGCGACcggGCGGGCCcUGCcccgGGGCGc -3'
miRNA:   3'- gaCGCUGca-CGCCCGGcACGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 125797 0.67 0.8149
Target:  5'- -aGCGAguCG-GCGGGCCGgcggGCgu-GCAg -3'
miRNA:   3'- gaCGCU--GCaCGCCCGGCa---CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 96347 0.67 0.823601
Target:  5'- -gGCGGCGgcaaugGCgGGGCCG-GCgguGGCAa -3'
miRNA:   3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 134502 0.67 0.823601
Target:  5'- gUGUa--GUGUGGGCCGUGCggccGCGg -3'
miRNA:   3'- gACGcugCACGCCCGGCACGauu-UGU- -5'
6373 3' -55.9 NC_001847.1 + 125506 0.67 0.840461
Target:  5'- gCUGCucgaGCG-GCGGGCCG-GCgcGGCGg -3'
miRNA:   3'- -GACGc---UGCaCGCCCGGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 103033 0.67 0.840461
Target:  5'- -gGCGGCGgGCGGGCCGcaGCc--GCGu -3'
miRNA:   3'- gaCGCUGCaCGCCCGGCa-CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 123468 0.67 0.848604
Target:  5'- -gGCGACGgccgccGCGGGCuCG-GCUGGGg- -3'
miRNA:   3'- gaCGCUGCa-----CGCCCG-GCaCGAUUUgu -5'
6373 3' -55.9 NC_001847.1 + 14343 0.67 0.856546
Target:  5'- -gGCGugGUgGCGGcGCC-UGCgggGAACGc -3'
miRNA:   3'- gaCGCugCA-CGCC-CGGcACGa--UUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.