miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 85649 0.69 0.739926
Target:  5'- -gGCGcGCGUcagguuugGCGcGGCCGUGCUGGcgcGCAg -3'
miRNA:   3'- gaCGC-UGCA--------CGC-CCGGCACGAUU---UGU- -5'
6373 3' -55.9 NC_001847.1 + 62142 0.69 0.739926
Target:  5'- -aGCGGCGUGCGcauGGCCGcgGCg--GCGu -3'
miRNA:   3'- gaCGCUGCACGC---CCGGCa-CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 79370 0.69 0.748758
Target:  5'- aUGCGAagcUGUGCGGcagcgcgcggcucGCCGUgggGCUGAGCGc -3'
miRNA:   3'- gACGCU---GCACGCC-------------CGGCA---CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 77211 0.69 0.749734
Target:  5'- -cGCGACGgagccGCGGGCCGccggGCccGGACu -3'
miRNA:   3'- gaCGCUGCa----CGCCCGGCa---CGa-UUUGu -5'
6373 3' -55.9 NC_001847.1 + 51603 0.69 0.749734
Target:  5'- -gGCGGCGUgaacauucucaGCGGGCCGcuggGCUuccuggugAAGCAg -3'
miRNA:   3'- gaCGCUGCA-----------CGCCCGGCa---CGA--------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 125574 0.69 0.759436
Target:  5'- -cGCGGCc-GCGGGCgGcggGCUGGACGg -3'
miRNA:   3'- gaCGCUGcaCGCCCGgCa--CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 88816 0.69 0.759436
Target:  5'- -cGCGGCccGCGggcGGCCGUGCUGcGCu -3'
miRNA:   3'- gaCGCUGcaCGC---CCGGCACGAUuUGu -5'
6373 3' -55.9 NC_001847.1 + 121414 0.69 0.759436
Target:  5'- gCUGCGugGaggGCGGaGCCGU--UGAGCGg -3'
miRNA:   3'- -GACGCugCa--CGCC-CGGCAcgAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 108740 0.69 0.759436
Target:  5'- aCUGCGACGcgacgGCGuuccuGCCGcGCUGGGCGc -3'
miRNA:   3'- -GACGCUGCa----CGCc----CGGCaCGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 59559 0.68 0.778485
Target:  5'- -gGCGGCGgggGCGGuGCCG-GCggAAGCu -3'
miRNA:   3'- gaCGCUGCa--CGCC-CGGCaCGa-UUUGu -5'
6373 3' -55.9 NC_001847.1 + 108034 0.68 0.778485
Target:  5'- -cGCGGCGgccgGCGGGgCGcGCgcGGCAa -3'
miRNA:   3'- gaCGCUGCa---CGCCCgGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 5221 0.68 0.778485
Target:  5'- -cGCGGCGgccgGCGGGgCGcGCgcGGCAa -3'
miRNA:   3'- gaCGCUGCa---CGCCCgGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 133567 0.68 0.787813
Target:  5'- -aGCGGCGcgcugGCGcGcGCCGUGCUGGccucGCGg -3'
miRNA:   3'- gaCGCUGCa----CGC-C-CGGCACGAUU----UGU- -5'
6373 3' -55.9 NC_001847.1 + 28088 0.68 0.787813
Target:  5'- gCUGUGGCGccUGCccgGGGCCGcGCgcGACAc -3'
miRNA:   3'- -GACGCUGC--ACG---CCCGGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 57044 0.68 0.787813
Target:  5'- -cGCGcCcUGUGGGCCGaggcgGCUAAGCu -3'
miRNA:   3'- gaCGCuGcACGCCCGGCa----CGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 134205 0.68 0.787813
Target:  5'- -aGCGGCGcgcGCGGGCCGaggGCg--GCGg -3'
miRNA:   3'- gaCGCUGCa--CGCCCGGCa--CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 30754 0.68 0.787813
Target:  5'- -aGCGGCGcgcugGCGcGcGCCGUGCUGGccucGCGg -3'
miRNA:   3'- gaCGCUGCa----CGC-C-CGGCACGAUU----UGU- -5'
6373 3' -55.9 NC_001847.1 + 44302 0.68 0.787813
Target:  5'- -cGCGGCGcgGCGGGCCa-GCgccaGAGCGg -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGcaCGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 134632 0.68 0.787813
Target:  5'- -aGCGugGgcuggggGCGGGCCG-GC--AGCAg -3'
miRNA:   3'- gaCGCugCa------CGCCCGGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 8125 0.68 0.796997
Target:  5'- -cGCGGgGccccagggGCGGGCgGUGCUGcGCGa -3'
miRNA:   3'- gaCGCUgCa-------CGCCCGgCACGAUuUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.