miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 8125 0.68 0.796997
Target:  5'- -cGCGGgGccccagggGCGGGCgGUGCUGcGCGa -3'
miRNA:   3'- gaCGCUgCa-------CGCCCGgCACGAUuUGU- -5'
6373 3' -55.9 NC_001847.1 + 45527 0.68 0.796997
Target:  5'- -gGCGGCGcgGacgGGGCCGUGCcgcGCAg -3'
miRNA:   3'- gaCGCUGCa-Cg--CCCGGCACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 68793 0.68 0.796997
Target:  5'- -cGCGGCGgccgcgcgaGCGGGCCGacggGggGAACAa -3'
miRNA:   3'- gaCGCUGCa--------CGCCCGGCa---CgaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 72583 0.68 0.805133
Target:  5'- -cGCGAUGcGCGGGCUGggccaaaacgcgcUGCUGGccGCAc -3'
miRNA:   3'- gaCGCUGCaCGCCCGGC-------------ACGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 85793 0.68 0.806029
Target:  5'- gUGCGcgucgaGgGUGCGGGCgCGUGCagcGACGg -3'
miRNA:   3'- gACGC------UgCACGCCCG-GCACGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 71442 0.68 0.806029
Target:  5'- -cGCGACGgGCGcGGCUuugaGCUGAGCGu -3'
miRNA:   3'- gaCGCUGCaCGC-CCGGca--CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 73767 0.68 0.806029
Target:  5'- -gGCGGCGgcGCGGGCCGcuacgaGCgcgGGGCGc -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGCa-----CGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 22951 0.68 0.806029
Target:  5'- gCUGgGugGgcugggGUGGGCUGgGCUGGGCu -3'
miRNA:   3'- -GACgCugCa-----CGCCCGGCaCGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 37594 0.68 0.809597
Target:  5'- gCUGCGGCGgccGgGGGCCGgcccgcGCUcuuuugcccgacgggGAGCAg -3'
miRNA:   3'- -GACGCUGCa--CgCCCGGCa-----CGA---------------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 112555 0.67 0.8149
Target:  5'- -cGCGACcggGCGGGCCcUGCcccgGGGCGc -3'
miRNA:   3'- gaCGCUGca-CGCCCGGcACGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 7251 0.67 0.8149
Target:  5'- -gGUGGCuGUGCGGGCgCG-GCggGGGCAc -3'
miRNA:   3'- gaCGCUG-CACGCCCG-GCaCGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 5062 0.67 0.8149
Target:  5'- -cGgGACGgacgGCGGGCCGggaGCgggcGGCAg -3'
miRNA:   3'- gaCgCUGCa---CGCCCGGCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 114050 0.67 0.8149
Target:  5'- -gGCGugGUGaUGGcGUCGUGCUuuACc -3'
miRNA:   3'- gaCGCugCAC-GCC-CGGCACGAuuUGu -5'
6373 3' -55.9 NC_001847.1 + 9742 0.67 0.8149
Target:  5'- -cGCGACcggGCGGGCCcUGCcccgGGGCGc -3'
miRNA:   3'- gaCGCUGca-CGCCCGGcACGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 125797 0.67 0.8149
Target:  5'- -aGCGAguCG-GCGGGCCGgcggGCgu-GCAg -3'
miRNA:   3'- gaCGCU--GCaCGCCCGGCa---CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 107875 0.67 0.8149
Target:  5'- -cGgGACGgacgGCGGGCCGggaGCgggcGGCAg -3'
miRNA:   3'- gaCgCUGCa---CGCCCGGCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 2193 0.67 0.8149
Target:  5'- -gGCGGCGUGCGGGCgcacCUcAAACAu -3'
miRNA:   3'- gaCGCUGCACGCCCGgcacGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 96347 0.67 0.823601
Target:  5'- -gGCGGCGgcaaugGCgGGGCCG-GCgguGGCAa -3'
miRNA:   3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 36001 0.67 0.823601
Target:  5'- gCUGCaGGCGgccGCGGGCgugGUGCUGGGg- -3'
miRNA:   3'- -GACG-CUGCa--CGCCCGg--CACGAUUUgu -5'
6373 3' -55.9 NC_001847.1 + 134502 0.67 0.823601
Target:  5'- gUGUa--GUGUGGGCCGUGCggccGCGg -3'
miRNA:   3'- gACGcugCACGCCCGGCACGauu-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.