miRNA display CGI


Results 81 - 100 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 32765 0.67 0.832124
Target:  5'- -gGCGGCGcuucGCGacGGCCGgccGCUGGACGc -3'
miRNA:   3'- gaCGCUGCa---CGC--CCGGCa--CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 69295 0.67 0.832124
Target:  5'- -cGCgGGCGUGCGGGCgGaccgGCUGc--- -3'
miRNA:   3'- gaCG-CUGCACGCCCGgCa---CGAUuugu -5'
6373 3' -55.9 NC_001847.1 + 79084 0.67 0.832124
Target:  5'- gUGCGACGUGUGc-CCGUGCgccGCGc -3'
miRNA:   3'- gACGCUGCACGCccGGCACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 125506 0.67 0.840461
Target:  5'- gCUGCucgaGCG-GCGGGCCG-GCgcGGCGg -3'
miRNA:   3'- -GACGc---UGCaCGCCCGGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 103033 0.67 0.840461
Target:  5'- -gGCGGCGgGCGGGCCGcaGCc--GCGu -3'
miRNA:   3'- gaCGCUGCaCGCCCGGCa-CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 43597 0.67 0.848604
Target:  5'- -aGCGugGcGCugGGGCCgGUGCUGGccACGg -3'
miRNA:   3'- gaCGCugCaCG--CCCGG-CACGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 123468 0.67 0.848604
Target:  5'- -gGCGACGgccgccGCGGGCuCG-GCUGGGg- -3'
miRNA:   3'- gaCGCUGCa-----CGCCCG-GCaCGAUUUgu -5'
6373 3' -55.9 NC_001847.1 + 77574 0.67 0.848604
Target:  5'- -cGCGGCcGcGCGGGCCGaGCUc-GCAc -3'
miRNA:   3'- gaCGCUG-CaCGCCCGGCaCGAuuUGU- -5'
6373 3' -55.9 NC_001847.1 + 73239 0.67 0.855761
Target:  5'- -gGCGGCG-GCGcgggcgcgcucgaGGCCGUGCgc-GCAc -3'
miRNA:   3'- gaCGCUGCaCGC-------------CCGGCACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 117531 0.67 0.856546
Target:  5'- -gGCGACGa-CGaGGCCGUGCgcAACc -3'
miRNA:   3'- gaCGCUGCacGC-CCGGCACGauUUGu -5'
6373 3' -55.9 NC_001847.1 + 14343 0.67 0.856546
Target:  5'- -gGCGugGUgGCGGcGCC-UGCgggGAACGc -3'
miRNA:   3'- gaCGCugCA-CGCC-CGGcACGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 31963 0.67 0.856546
Target:  5'- -cGCGGCGgcgGCGGGCCccG-UGGACGc -3'
miRNA:   3'- gaCGCUGCa--CGCCCGGcaCgAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 54383 0.67 0.856546
Target:  5'- gCUGCGGCGgGCGG-CCGcggGCgAGGCGg -3'
miRNA:   3'- -GACGCUGCaCGCCcGGCa--CGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 102852 0.66 0.86428
Target:  5'- -gGCGGCGUcGCGGGgCCGcGCcacgcGGACGg -3'
miRNA:   3'- gaCGCUGCA-CGCCC-GGCaCGa----UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 73780 0.66 0.86428
Target:  5'- -cGCGACGccucgccggUGCGGggcugccuGCCGguggGCUAGGCGc -3'
miRNA:   3'- gaCGCUGC---------ACGCC--------CGGCa---CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 65878 0.66 0.86428
Target:  5'- -aGCuGACGUGgGGGCCGcccaUGCgccACGc -3'
miRNA:   3'- gaCG-CUGCACgCCCGGC----ACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 53934 0.66 0.86428
Target:  5'- -gGCGACG-GCGGcuCUGUGCgcgAGGCGg -3'
miRNA:   3'- gaCGCUGCaCGCCc-GGCACGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 102999 0.66 0.86428
Target:  5'- -cGCGGCGUgcGCGGGCgCGgcgGCgcccAGCGc -3'
miRNA:   3'- gaCGCUGCA--CGCCCG-GCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 86636 0.66 0.86428
Target:  5'- -cGUGugG-GCGGGCCGcGCcgccccgGAGCGc -3'
miRNA:   3'- gaCGCugCaCGCCCGGCaCGa------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 102678 0.66 0.86428
Target:  5'- aUGUGAUGaacgcgcugGCGGGCgUGUGCUGcGGCAg -3'
miRNA:   3'- gACGCUGCa--------CGCCCG-GCACGAU-UUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.